View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_low_18 (Length: 393)

Name: NF16975_low_18
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_low_18
NF16975_low_18
[»] chr4 (5 HSPs)
chr4 (281-388)||(15041625-15041733)
chr4 (281-388)||(15112691-15112799)
chr4 (281-382)||(15039902-15040004)
chr4 (281-382)||(15114420-15114522)
chr4 (281-388)||(16003524-16003631)
[»] chr7 (3 HSPs)
chr7 (286-388)||(10868013-10868117)
chr7 (286-388)||(10866296-10866399)
chr7 (302-388)||(20186152-20186238)
[»] chr6 (3 HSPs)
chr6 (281-388)||(30579978-30580085)
chr6 (296-369)||(34244769-34244843)
chr6 (303-367)||(13214011-13214075)
[»] chr8 (2 HSPs)
chr8 (295-378)||(30187753-30187837)
chr8 (336-377)||(22692478-22692519)
[»] chr1 (1 HSPs)
chr1 (295-376)||(17309792-17309874)
[»] chr3 (3 HSPs)
chr3 (281-365)||(34143008-34143093)
chr3 (286-330)||(8584451-8584495)
chr3 (294-377)||(19844732-19844816)
[»] chr5 (1 HSPs)
chr5 (294-382)||(33566762-33566852)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 281 - 388
Target Start/End: Complemental strand, 15041733 - 15041625
Alignment:
Q  281 caagcagttaggataattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaacggttttccc 379  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||    
T  15041733 caagtagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccc 15041634  T
Q  380 tatgcttct 388  Q
    |||| ||||    
T  15041633 tatgtttct 15041625  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 281 - 388
Target Start/End: Original strand, 15112691 - 15112799
Alignment:
Q  281 caagcagttaggataattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaacggttttccc 379  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||    
T  15112691 caagtagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcaatatgaattctaagggttttccc 15112790  T
Q  380 tatgcttct 388  Q
    |||| ||||    
T  15112791 tatgtttct 15112799  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 281 - 382
Target Start/End: Complemental strand, 15040004 - 15039902
Alignment:
Q  281 caagcagttaggataattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaacggttttccc 379  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||    
T  15040004 caagtagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccc 15039905  T
Q  380 tat 382  Q
    |||    
T  15039904 tat 15039902  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 281 - 382
Target Start/End: Original strand, 15114420 - 15114522
Alignment:
Q  281 caagcagttaggataattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaacggttttccc 379  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||    
T  15114420 caagtagttagggtcattgaggtctataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaattcactatgaattctaagggttttccc 15114519  T
Q  380 tat 382  Q
    |||    
T  15114520 tat 15114522  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 281 - 388
Target Start/End: Original strand, 16003524 - 16003631
Alignment:
Q  281 caagcagttaggataattgaggtctataaaaggaccaaccatgtactcattcattaatctttttcaatacaattcataatgaattctaacggttttccct 380  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||  ||||| |||    
T  16003524 caagtagttagggtaattgaggtctataaaaggaccaaccatatactcattcatcaatctttttaaatacaatttataatgaattctaagagtttttcct 16003623  T
Q  381 atgcttct 388  Q
    ||| ||||    
T  16003624 atgtttct 16003631  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 10868013 - 10868117
Alignment:
Q  286 agttaggataattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaacgg-ttttccctatg 383  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| || |||||||||||    
T  10868013 agttagggtaattgaggtctataaaaggaccaaccatgtactcattcatataatctttttcaatacaattcaatatgaattctaagggtttttccctatg 10868112  T
Q  384 cttct 388  Q
     ||||    
T  10868113 tttct 10868117  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 10866296 - 10866399
Alignment:
Q  286 agttaggataattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaacggttttccctatgc 384  Q
    ||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| |  ||||||||||| |||||||||||||     
T  10866296 agttagggtaattgagatttataaaaggaccaaccatgtactcattcatgtaatctttttcaatacaatttaatatgaattctaagggttttccctatgt 10866395  T
Q  385 ttct 388  Q
    ||||    
T  10866396 ttct 10866399  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 20186152 - 20186238
Alignment:
Q  302 gtctataaaaggaccaaccatgtactcattcattaatctttttcaatacaattcataatgaattctaacggttttccctatgcttct 388  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||    
T  20186152 gtctatataaggatcaaccatgtactcattcattaatctttttcaatacaattcaatatgaattctaagggttttccctatgtttct 20186238  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 281 - 388
Target Start/End: Complemental strand, 30580085 - 30579978
Alignment:
Q  281 caagcagttaggataattgaggtctataaaaggaccaaccatgtactcattcattaatctttttcaatacaattcataatgaattctaacggttttccct 380  Q
    |||| ||||||| |||||||||||||||| | || |||||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||    
T  30580085 caagtagttagggtaattgaggtctataatatgatcaaccatgaactcattcatcaatctttttcattacaattcataatgaattctaagggttttctct 30579986  T
Q  381 atgcttct 388  Q
    ||| ||||    
T  30579985 atgtttct 30579978  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 34244769 - 34244843
Alignment:
Q  296 attgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaa 369  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  34244769 attgaggtctataaaaggaccaaccatatactcattcatataatctttttcaatacaattcataatgaattctaa 34244843  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 13214075 - 13214011
Alignment:
Q  303 tctataaaaggaccaaccatgtactcattcattaatctttttcaatacaattcataatgaattct 367  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  13214075 tctataaaaggaccaaccatgtacttattcatcaatcttttttaatacaattcataatgaattct 13214011  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 30187837 - 30187753
Alignment:
Q  295 aattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaattctaacggttttcc 378  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||    
T  30187837 aattgaggtctataaaaggaccaatcatgtactcattcatgtaatttttttcaatacaattcataatgaattttaagggttttcc 30187753  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 22692478 - 22692519
Alignment:
Q  336 aatctttttcaatacaattcataatgaattctaacggttttc 377  Q
    |||||||||||||||||||||  ||||||||||| |||||||    
T  22692478 aatctttttcaatacaattcaatatgaattctaagggttttc 22692519  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 17309874 - 17309792
Alignment:
Q  295 aattgaggtctataaa-aggaccaaccatgtactcattcattaatctttttcaatacaattcataatgaattctaacggtttt 376  Q
    |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||    
T  17309874 aattgaggtctataaataagaccatccatgtactcattaattaatctttttcaatacaattcaatatgaattctaagggtttt 17309792  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 34143008 - 34143093
Alignment:
Q  281 caagcagttaggataattgaggtctataaaaggaccaaccatgtactcattcat-taatctttttcaatacaattcataatgaatt 365  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||  ||||||  |||||||    
T  34143008 caagtagttagggtaattgagttctataaaaggaccaaccatgtactcattcatgcaatctttttcaatctaattcaatatgaatt 34143093  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 8584451 - 8584495
Alignment:
Q  286 agttaggataattgaggtctataaaaggaccaaccatgtactcat 330  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  8584451 agttaggaaaattgaggtctataaaaggaccaaccatgtactcat 8584495  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 377
Target Start/End: Complemental strand, 19844816 - 19844732
Alignment:
Q  294 taattgaggtctataaaaggaccaaccatgtactcattc--attaatctttttcaatacaattcataatgaattctaacggttttc 377  Q
    ||||||||||||||||||| |||| | |||||||||||   || |||||||||||||||||||||  ||  ||||||| |||||||    
T  19844816 taattgaggtctataaaag-accatctatgtactcattactatcaatctttttcaatacaattcaatattcattctaagggttttc 19844732  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 33566852 - 33566762
Alignment:
Q  294 taattgaggtctataaaaggaccaaccatgtactcatt---cattaatctttttcaatacaattcataatgaattctaacggttttccctat 382  Q
    ||||| ||||||||||||| |||| |||||||||||||   | ||||||||||||||| |||||||  ||||||||||| ||||||||||||    
T  33566852 taatttaggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctat 33566762  T

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