View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_low_2 (Length: 620)

Name: NF16975_low_2
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_low_2
NF16975_low_2
[»] chr5 (8 HSPs)
chr5 (1-620)||(29711712-29712331)
chr5 (3-533)||(29688305-29688827)
chr5 (1-533)||(29696407-29696940)
chr5 (129-218)||(179357-179446)
chr5 (570-620)||(29688941-29688991)
chr5 (136-260)||(9120069-9120193)
chr5 (486-531)||(9120420-9120465)
chr5 (536-572)||(29688846-29688882)
[»] chr3 (1 HSPs)
chr3 (297-446)||(47451345-47451494)
[»] chr4 (15 HSPs)
chr4 (131-270)||(48147334-48147473)
chr4 (129-166)||(48863570-48863607)
chr4 (189-278)||(49043781-49043870)
chr4 (299-387)||(48903421-48903509)
chr4 (190-249)||(48864395-48864454)
chr4 (468-531)||(48871196-48871259)
chr4 (468-531)||(48876500-48876563)
chr4 (468-531)||(48886882-48886945)
chr4 (176-262)||(7790426-7790512)
chr4 (176-218)||(7878729-7878771)
chr4 (570-620)||(48734632-48734682)
chr4 (129-166)||(49040871-49040908)
chr4 (576-613)||(49058043-49058080)
chr4 (472-525)||(50669722-50669775)
chr4 (186-258)||(48853037-48853109)
[»] chr8 (3 HSPs)
chr8 (297-379)||(4030300-4030382)
chr8 (191-249)||(15349244-15349302)
chr8 (570-618)||(4029986-4030034)
[»] chr1 (3 HSPs)
chr1 (132-171)||(24310521-24310560)
chr1 (132-166)||(24367473-24367507)
chr1 (132-166)||(24416083-24416117)
[»] chr7 (1 HSPs)
chr7 (346-384)||(30124824-30124862)


Alignment Details
Target: chr5 (Bit Score: 592; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 29712331 - 29711712
Alignment:
Q  1 gctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccagctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712331 gctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccagctg 29712232  T
Q  101 atataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712231 atataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatg 29712132  T
Q  201 ggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgataca 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29712131 ggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatggaattcccagccattatttttgtccgaaatacgataca 29712032  T
Q  301 aaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  29712031 aaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgagaaaggacaactgctagagcatcagtcctactgtgacaatgaat 29711932  T
Q  401 atggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaagctaagaagatgaaacgaataagaagaacgaggtc 500  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29711931 atggatccctagtggttatgtatacagaatctctgctttcaattcctgatggtgacagtggtcaagctaagaagatgaaacgaataagaagaacgaggtc 29711832  T
Q  501 ttgaagtattctccttcaccattttcgtgatctacatgtactcttgggtggctgcattcgtaggttaatatgaagtgtttattggttaaacatttgtaat 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29711831 ttgaagtattctccttcaccattttcgtgatctacatgtactcttgggtggctgcattcgtaggttaatatggagtgtttattggttaaacatttgtaat 29711732  T
Q  601 atgtttattgaaaatgttga 620  Q
    ||| ||||||||||||||||    
T  29711731 atgcttattgaaaatgttga 29711712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 533
Target Start/End: Original strand, 29688305 - 29688827
Alignment:
Q  3 tattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccagctgat 102  Q
    |||||||||||||||| ||  |||||||| ||||| |||||||||| |||| | |||||||| | ||||| | ||| |||||||| |||||||   || |    
T  29688305 tattcactggttggcttttcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgcctttgcctattggt 29688404  T
Q  103 ataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatg-gcacatgataatggtacagttgaaatatgg 201  Q
    ||||    || ||||||   |||||||||||||||| |||| |||||||||||||||||||  |||||| |||| |||||||||||||||||||||||||    
T  29688405 ataaataatggtcctag---agtgtatgatttatggctattcagaggatgtctcagtctatttgatatgtgcac-tgataatggtacagttgaaatatgg 29688500  T
Q  202 gtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgatacaa 301  Q
    |||||| ||||||||||||||  ||| |||||||| |||| ||| ||| | ||||||| ||  ||||||| ||| || ||||||||||||||   |||||    
T  29688501 gtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttttgtccgaaatattgtacaa 29688600  T
Q  302 aaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaata 401  Q
    ||||||||||||||||||||||  | | |   ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||| |||||||    
T  29688601 aaagtggtgatatcgttggaaccgacgat---aatgtattggccaagtataatgataaaggacagctgctagagcatcactcctactcggaccatgaata 29688697  T
Q  402 tggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaagc-taagaagatgaaacgaataagaagaacgaggtc 500  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||| || ||||||||||  ||| |  | ||||| |||||     
T  29688698 tggatccctagtggttatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatg--acgca-gacaagaatgaggtt 29688794  T
Q  501 ttgaagtattctccttcaccattttcgtgatct 533  Q
    || |||||||| |||||||||||||| ||||||    
T  29688795 ttcaagtattccccttcaccattttcatgatct 29688827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 29696407 - 29696940
Alignment:
Q  1 gctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccagctg 100  Q
    |||||||||||||||||| || || |||||||||||| |  ||||||| ||| || |||||||||  ||||| | ||||||||||||  |||||||  ||    
T  29696407 gctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaacttctagagttgcgtttgccaaatg 29696506  T
Q  101 atataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatg 200  Q
    | ||||    || |||||| |  | ||||||||||||||| | |||||||||||||  ||||||| ||||    | |||||  | |||| || |||||||    
T  29696507 agataatcaatggtcctagcagggcgtatgatttatgggtgtatagaggatgtctcgctctatggcatattttgcctgatagagttacatttcaaatatg 29696606  T
Q  201 ggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaatacgataca 300  Q
    ||||||||||||||||||||||  ||| ||||||||||||| ||||||  ||||||||||||| | |||   ||| |  ||||| ||||||||| |||||    
T  29696607 ggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgtcctgtcttttgatggcaatcctgctcactccttttggccgaaatactataca 29696706  T
Q  301 aaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaatgaat 400  Q
    |||||||||||||||||||||| |||     ||  || ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| | |||    
T  29696707 aaaagtggtgatatcgttggaagaaacatgcgttgtgcattggccaagtataatgacaaaggacagctgcaagaacatcactcctactgtgacagtcaat 29696806  T
Q  401 atggatccctagtggttatgtatacagaatctctgctctcaattcctgatggtgacagtggtcaag-ctaagaagatgaaacgaataagaagaacgaggt 499  Q
    ||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||| |  |  |||||||| |||||    
T  29696807 atgtatccccagtggttatgtatacagaatctctgctttcaattcctggtggtgacagtggtcaagtttaagaagatgacagaaccaagaagaatgaggt 29696906  T
Q  500 cttgaagtattctccttcaccattttcgtgatct 533  Q
     |||||||||||| ||||||||||||| ||||||    
T  29696907 tttgaagtattcttcttcaccattttcatgatct 29696940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 179357 - 179446
Alignment:
Q  129 tgatttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaa 218  Q
    |||| ||||||||||| ||  || ||||||| |||||| |||||   ||||||||| |||||||||||||||||||||| || |||||||    
T  179357 tgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaa 179446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 620
Target Start/End: Original strand, 29688941 - 29688991
Alignment:
Q  570 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttga 620  Q
    ||||| ||||||||||| ||||||||||| | |||||||||||||||||||    
T  29688941 atgaaatgtttattggtcaaacatttgtattgtgtttattgaaaatgttga 29688991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 260
Target Start/End: Original strand, 9120069 - 9120193
Alignment:
Q  136 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 235  Q
    ||||||||| ||| || ||||||| |||||| |||||    || ||||| |||||||||||||||||||||| || ||||||| |||   || |||||||    
T  9120069 tgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttgga 9120168  T
Q  236 ctaagattcttgttttgtcttttga 260  Q
      || | ||||||||||||| ||||    
T  9120169 agaaaactcttgttttgtctattga 9120193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 531
Target Start/End: Original strand, 9120420 - 9120465
Alignment:
Q  486 aagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 531  Q
    |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  9120420 aagaagaatgaggttttgaaatattctccttcaccattttcttgat 9120465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 572
Target Start/End: Original strand, 29688846 - 29688882
Alignment:
Q  536 atgtactcttgggtggctgcattcgtaggttaatatg 572  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  29688846 atgtactcttgagtggctgcattcgtagggtaatatg 29688882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 446
Target Start/End: Complemental strand, 47451494 - 47451345
Alignment:
Q  297 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaat 396  Q
    ||||||||||||||||||  |||||||| ||| || ||  | |||||  ||||||||||||||||||||  || |||||||||  ||||| ||| || ||    
T  47451494 tacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatcgttcctattgtaacgat 47451395  T
Q  397 gaatatggatccctagtggttatgtatacagaatctctgctctcaattcc 446  Q
      || ||||| || |||||||||||| ||||| |||||||| ||| ||||    
T  47451394 ccatgtggatgccaagtggttatgtacacagagtctctgctttcacttcc 47451345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 48147473 - 48147334
Alignment:
Q  131 atttatgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttc 230  Q
    |||| ||||||||| ||  || ||||||||||  || |||||  ||||| ||| | | ||||||||||||||||||| || ||||||| |||   || ||    
T  48147473 atttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 48147374  T
Q  231 ttggactaagattcttgttttgtcttttgatggaattccc 270  Q
    ||||||||||| ||||  ||||||| ||||||| ||||||    
T  48147373 ttggactaagactcttaatttgtctattgatggcattccc 48147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 48863570 - 48863607
Alignment:
Q  129 tgatttatgggtatttagaggatgtctcagtctatggg 166  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48863570 tgatttatgggtatttagaggatctctcagtctatggg 48863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 49043870 - 49043781
Alignment:
Q  189 agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcatta 278  Q
    ||||||||||||||||||| || ||||||| |||   || || |||||||||| ||||||||| ||| ||||||  ||||||| ||||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcatta 49043781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 48903421 - 48903509
Alignment:
Q  299 caaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctac 387  Q
    |||||| |||||| ||| |||||||||| | ||||| |  |||||  ||||||||||||||||||||  | |||||| |||||||||||    
T  48903421 caaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagtatcactcctac 48903509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
Q  190 gttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 249  Q
    |||||||||||||||||| || ||||||| |||   || |||||||||||||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt 48864454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 531
Target Start/End: Original strand, 48871196 - 48871259
Alignment:
Q  468 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 531  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48871196 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48871259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 531
Target Start/End: Original strand, 48876500 - 48876563
Alignment:
Q  468 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 531  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48876500 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48876563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 531
Target Start/End: Original strand, 48886882 - 48886945
Alignment:
Q  468 taagaagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccattttcgtgat 531  Q
    ||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  48886882 taagaaggtgacacaaacaagaagaatgaggttttgaattattctccttcaccattttcttgat 48886945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 7790426 - 7790512
Alignment:
Q  176 atgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatg 262  Q
    ||||||||| |||| ||||||||||||||||| || ||||||| |||   || ||||||||||| | ||||||| | ||| ||||||    
T  7790426 atgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatg 7790512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 7878729 - 7878771
Alignment:
Q  176 atgataatggtacagttgaaatatgggtgatggaaaaatacaa 218  Q
    ||||||||| |||||||||||||||||||||| || |||||||    
T  7878729 atgataatgatacagttgaaatatgggtgatgaaagaatacaa 7878771  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 620
Target Start/End: Complemental strand, 48734682 - 48734632
Alignment:
Q  570 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgttga 620  Q
    ||||| |||||||| || ||||||||||||||||||||| |||| ||||||    
T  48734682 atgaaatgtttattagtcaaacatttgtaatatgtttatcgaaattgttga 48734632  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 49040908 - 49040871
Alignment:
Q  129 tgatttatgggtatttagaggatgtctcagtctatggg 166  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  49040908 tgatttatgggtatttaaaggatttctcagtctatggg 49040871  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 613
Target Start/End: Complemental strand, 49058080 - 49058043
Alignment:
Q  576 tgtttattggttaaacatttgtaatatgtttattgaaa 613  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  49058080 tgtttattggtcaaacacttgtaatatgtttattgaaa 49058043  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 50669722 - 50669775
Alignment:
Q  472 aagatgaaacgaataagaagaacgaggtcttgaagtattctccttcaccatttt 525  Q
    ||||||| || || ||||||||| |||| ||||| |||||||||||||||||||    
T  50669722 aagatgacacaaacaagaagaacaaggttttgaaatattctccttcaccatttt 50669775  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 48853037 - 48853109
Alignment:
Q  186 tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtctttt 258  Q
    |||||||||||||||||| ||| || ||||||| |||   || ||||||||||||| ||||||| | ||||||    
T  48853037 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttctttt 48853109  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 4030382 - 4030300
Alignment:
Q  297 tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc 379  Q
    ||||| ||||||||||||  |||||||| ||| ||||| || |||||  |||||| |||||||||||||  ||||||||||||    
T  4030382 tacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagcatc 4030300  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 15349244 - 15349302
Alignment:
Q  191 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt 249  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| ||||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 15349302  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 618
Target Start/End: Complemental strand, 4030034 - 4029986
Alignment:
Q  570 atgaagtgtttattggttaaacatttgtaatatgtttattgaaaatgtt 618  Q
    ||||| || |||||| |||| |||||| |||||||||||||||||||||    
T  4030034 atgaaatggttattgattaatcatttggaatatgtttattgaaaatgtt 4029986  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 24310521 - 24310560
Alignment:
Q  132 tttatgggtatttagaggatgtctcagtctatgggatatg 171  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24310521 tttatgggtatttagaggatttctcagtctatgggttatg 24310560  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 24367473 - 24367507
Alignment:
Q  132 tttatgggtatttagaggatgtctcagtctatggg 166  Q
    |||||||||||||||||||| ||||||||||||||    
T  24367473 tttatgggtatttagaggatttctcagtctatggg 24367507  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 24416083 - 24416117
Alignment:
Q  132 tttatgggtatttagaggatgtctcagtctatggg 166  Q
    |||||||||||||||||||| ||||||||||||||    
T  24416083 tttatgggtatttagaggatttctcagtctatggg 24416117  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 30124862 - 30124824
Alignment:
Q  346 aagtataatgacaaaggacaactgctagagcatcactcc 384  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  30124862 aagtttaatgacaaaggacagctgctagagcatcactcc 30124824  T

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