View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_20 (Length: 378)
Name: NF16975_low_20
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_20 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 179 - 378
Target Start/End: Original strand, 40641276 - 40641470
Alignment:
| Q |
179 |
gctggatgtgatttccaggaccatattcatagcaagagaatttagaacctaggattgacctgaactttaggcacaaacttaaatattatcttctcctcga |
278 |
Q |
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| T |
40641276 |
gctggatatgatttccaggaccatattcatagcaagagaatttagaacctaggattga-----actttaggcacaaacttaaatattatcttctcctcga |
40641370 |
T |
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| Q |
279 |
gtgatatatattccacccaattcatgtaagtaaaatccatgtgcgtcagtaatcagttgcattcatgaatcgttgaattttccgtttgttagtggcatgt |
378 |
Q |
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| T |
40641371 |
gtgatatatattccacccaattcatgtaagtaaaatccatgtgcgtcagtaatcagttgcattcatgaatcgttgaattttccgtttgttagtggcatgt |
40641470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 40640539 - 40640652
Alignment:
| Q |
7 |
tccaagaatatattatttatgatgactatgaggt---ctcctctcc-ttttttaactccttagaaatatcggatttaatcgtaaaatttccgttcacttt |
102 |
Q |
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| T |
40640539 |
tccaaaaatatattatttatgatgactatgaggtttgatcatctcctttttttaactccttagaaatatcggatttaatcgtaaaatttccgttcacttt |
40640638 |
T |
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| Q |
103 |
gaggggccaggacc |
116 |
Q |
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| T |
40640639 |
gaggggccaggacc |
40640652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 40641219 - 40641258
Alignment:
| Q |
108 |
gccaggaccacctatcttctactgccttgtgaaacgaagt |
147 |
Q |
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| T |
40641219 |
gccatgaccacctatcttctactgccttgtgaaacgaagt |
40641258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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