View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_low_25 (Length: 354)

Name: NF16975_low_25
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_low_25
NF16975_low_25
[»] chr1 (1 HSPs)
chr1 (1-160)||(38821384-38821543)
[»] chr5 (3 HSPs)
chr5 (251-337)||(39291702-39291785)
chr5 (247-337)||(26711044-26711131)
chr5 (247-337)||(26980781-26980868)
[»] chr2 (1 HSPs)
chr2 (250-337)||(21189057-21189141)
[»] chr4 (2 HSPs)
chr4 (285-337)||(20059737-20059789)
chr4 (250-337)||(13010886-13010970)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 38821384 - 38821543
Alignment:
Q  1 ttcactagccagcagtcgaccatggctccacaaatttctgttctaagttctgatttggaacctcgcaattggnnnnnnnnnnnnnnnnncaaagttaccg 100  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||                 |||||||||||    
T  38821384 ttcactatccagcagtcgaccatggctccacaaatctctgttctaagttctgatttggaacctcccaattggttttatttttttcttttcaaagttaccg 38821483  T
Q  101 tgttagaattgttgtgtttgaacataaaatatttacatcttatacaactactagaaatgt 160  Q
    ||||||||| || |||||||||||||||||||||||| |||||| ||| |||||||||||    
T  38821484 tgttagaatagtagtgtttgaacataaaatatttacaccttatagaaccactagaaatgt 38821543  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 39291702 - 39291785
Alignment:
Q  251 gttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatt 337  Q
    |||| |||||||||||| ||||||| ||||||||||   ||||||||||||| |  ||| |||| ||||||||||||||||||||||    
T  39291702 gttccaatatccccttaaatatctccatgactcatc---attattaagagatccttattctatttcttttgaccacatgttcctatt 39291785  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 26711131 - 26711044
Alignment:
Q  247 actggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatt 337  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||   ||||||||||   |||||||||| |||||| |||||| |||||||    
T  26711131 actggttccaatatcccattaaatatctccatgactcatcatt---attaagagatattcattttattcattttgatcacatggtcctatt 26711044  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 26980868 - 26980781
Alignment:
Q  247 actggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatt 337  Q
    |||||||| |||||||| ||| ||||||| |||||||||||||   ||||||||||   |||||||||| |||||| |||||| |||||||    
T  26980868 actggttccaatatcccattaaatatctccatgactcatcatt---attaagagatattcattttattcattttgatcacatggtcctatt 26980781  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 21189057 - 21189141
Alignment:
Q  250 ggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatt 337  Q
    ||||| |||||||| ||| ||||||| ||||||||||||||   ||||||||| || ||||||||| || | ||||||||||||||||    
T  21189057 ggttccaatatccctttaaatatctccatgactcatcatta---ttaagagatccatattttattctttgtaaccacatgttcctatt 21189141  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 20059789 - 20059737
Alignment:
Q  285 tcattattattaagagatgcacattttattccttttgaccacatgttcctatt 337  Q
    |||| ||||||||||||| |  |||||||||||||||||||||||||||||||    
T  20059789 tcatcattattaagagattcttattttattccttttgaccacatgttcctatt 20059737  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 13010970 - 13010886
Alignment:
Q  250 ggttctaatatccccttagatatctctatgactcatcattattattaagagatgcacattttattccttttgaccacatgttcctatt 337  Q
    ||||| |||||||||||| ||||||| |||||||||||||   |||||||||| |  |||| |||| || | ||||||||||||||||    
T  13010970 ggttccaatatccccttaaatatctccatgactcatcatt---attaagagatccttatttcattctttgtaaccacatgttcctatt 13010886  T

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