View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_low_26 (Length: 353)

Name: NF16975_low_26
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_low_26
NF16975_low_26
[»] chr7 (6 HSPs)
chr7 (18-346)||(21410729-21411054)
chr7 (317-353)||(42262107-42262143)
chr7 (319-353)||(45709720-45709754)
chr7 (317-353)||(22760891-22760927)
chr7 (317-353)||(23552146-23552182)
chr7 (321-353)||(29916820-29916852)
[»] chr2 (6 HSPs)
chr2 (318-352)||(4438992-4439026)
chr2 (317-353)||(34041600-34041636)
chr2 (319-353)||(37480105-37480139)
chr2 (320-353)||(16918590-16918623)
chr2 (319-351)||(16381668-16381700)
chr2 (317-353)||(19244137-19244173)
[»] chr4 (4 HSPs)
chr4 (317-353)||(14451758-14451794)
chr4 (319-353)||(38869798-38869832)
chr4 (317-353)||(25869589-25869625)
chr4 (317-353)||(47044745-47044781)
[»] chr1 (9 HSPs)
chr1 (317-353)||(51814522-51814558)
chr1 (319-353)||(15786332-15786366)
chr1 (318-351)||(22049842-22049875)
chr1 (320-353)||(41508862-41508895)
chr1 (319-351)||(8177196-8177228)
chr1 (317-353)||(8904442-8904478)
chr1 (317-353)||(12587298-12587334)
chr1 (317-353)||(25297800-25297836)
chr1 (319-351)||(44046162-44046194)
[»] chr8 (2 HSPs)
chr8 (319-353)||(19703499-19703533)
chr8 (317-353)||(23361661-23361697)
[»] chr5 (2 HSPs)
chr5 (319-353)||(84854-84888)
chr5 (317-353)||(14495817-14495853)
[»] chr3 (8 HSPs)
chr3 (319-353)||(7975448-7975482)
chr3 (319-353)||(30311336-30311370)
chr3 (319-348)||(28928896-28928925)
chr3 (317-353)||(4844523-4844559)
chr3 (317-353)||(4870219-4870255)
chr3 (317-353)||(5499419-5499455)
chr3 (317-353)||(39253725-39253761)
chr3 (319-351)||(46518658-46518690)
[»] chr6 (1 HSPs)
chr6 (320-353)||(28363968-28364001)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 21411054 - 21410729
Alignment:
Q  18 gaaataagttaaaaagacaggaaataatttcatgcgacaactgttacagtttctcgatcgtttgtccattgaaatttagcccccataacgggataggatg 117  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21411054 gaaataagttaaaaagacaggaaataatttcatgcgacag-tgttacagtttctcgatcgtttgtccattgaaatttagcccccataacgggataggatg 21410956  T
Q  118 tctccatggaaaccaacaacattaaattgccacattgagaaaaggaacttaccacacaatgtgtgtgaaaattgtagggaaataaggggtgtcaaaccgg 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21410955 tctccatggaaaccaacaacattaaaatgccacattgagaaaaggaacttaccacacaatgtgtgtgaaaattgtagggaaataaggggtgtcaaaccgg 21410856  T
Q  218 ctgtcttgccactatttaagttgtgtatattaaagtacaacatcgtcaacattctttgtttgtaacccacttgggttaatctggtggtattagacttagg 317  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| ||||||||| |||||| |    
T  21410855 ctgtcttgccactatttaagt--tgtatattaaagtaccacatcgtcaacattcttcgtttgtaatccacttggtttgatcaggtggtatt-gacttaag 21410759  T
Q  318 actt-gggatctgagagtgtgctcctcctc 346  Q
    | || |||||||||||||||||||||||||    
T  21410758 atttggggatctgagagtgtgctcctcctc 21410729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 42262143 - 42262107
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||||||||||||||||||||| |||||||    
T  42262143 gacttgggatctgagagtgtgctcctcctaaaggtct 42262107  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 45709754 - 45709720
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||||||||||||||||||||| ||||||    
T  45709754 cttgggatctgagagtgtgctcctcctcgaggtct 45709720  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 22760891 - 22760927
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  22760891 gacttgggacctgggagtgtgctcctcctcaaggtct 22760927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 23552146 - 23552182
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  23552146 gacttgggacctgggagtgtgctcctcctcaaggtct 23552182  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 29916852 - 29916820
Alignment:
Q  321 tgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||| ||||||||||||||||||||||||    
T  29916852 tgggatctaagagtgtgctcctcctcaaggtct 29916820  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 4439026 - 4438992
Alignment:
Q  318 acttgggatctgagagtgtgctcctcctcaaggtc 352  Q
    |||||||||||||||||||||||||||||||||||    
T  4439026 acttgggatctgagagtgtgctcctcctcaaggtc 4438992  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 34041636 - 34041600
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34041636 gacttaggatctgagagtgtgctcctcctcaaggtct 34041600  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 37480105 - 37480139
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||| |||||||||||||||||||||||||||    
T  37480105 cttgggacctgagagtgtgctcctcctcaaggtct 37480139  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 16918623 - 16918590
Alignment:
Q  320 ttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||| |||||||||||||||||||||||    
T  16918623 ttgggatctgggagtgtgctcctcctcaaggtct 16918590  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 16381700 - 16381668
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggt 351  Q
    |||||||||||||||||| ||||||||||||||    
T  16381700 cttgggatctgagagtgttctcctcctcaaggt 16381668  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 19244137 - 19244173
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  19244137 gacttgggacctgagagtgtgctcctccccaaggtct 19244173  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 14451794 - 14451758
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14451794 gacttgggatatgagagtgtgctcctcctcaaggtct 14451758  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 38869798 - 38869832
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||| |||||||||||||||||||||||    
T  38869798 cttgggatctgggagtgtgctcctcctcaaggtct 38869832  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 25869625 - 25869589
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  25869625 gacttgagatctgagagtgtgctcctcctcaaagtct 25869589  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 47044745 - 47044781
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  47044745 gacttgggatctgagagtttgctcctcctcgaggtct 47044781  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 51814522 - 51814558
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||| ||||||||||||||||||||||||||||||    
T  51814522 gacttgagatctgagagtgtgctcctcctcaaggtct 51814558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 15786366 - 15786332
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||| |||||||||||||||||||||||    
T  15786366 cttgggatctgggagtgtgctcctcctcaaggtct 15786332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 22049875 - 22049842
Alignment:
Q  318 acttgggatctgagagtgtgctcctcctcaaggt 351  Q
    |||||||||||||||||||||| |||||||||||    
T  22049875 acttgggatctgagagtgtgcttctcctcaaggt 22049842  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 41508862 - 41508895
Alignment:
Q  320 ttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||| |||||||||||||||||||||||    
T  41508862 ttgggatctgggagtgtgctcctcctcaaggtct 41508895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 8177228 - 8177196
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggt 351  Q
    ||||||||||| |||||||||||||||||||||    
T  8177228 cttgggatctgggagtgtgctcctcctcaaggt 8177196  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 8904442 - 8904478
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||| || |||||||||||||||||||||||    
T  8904442 gacttgggatatgtgagtgtgctcctcctcaaggtct 8904478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 12587298 - 12587334
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  12587298 gacttgggatctgtgagtgtgctcctcctcgaggtct 12587334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 25297800 - 25297836
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25297800 gacttaggatctgagagtgtgctcctcctcgaggtct 25297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 44046194 - 44046162
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggt 351  Q
    ||||||||||| |||||||||||||||||||||    
T  44046194 cttgggatctgggagtgtgctcctcctcaaggt 44046162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 19703533 - 19703499
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||| |||||||||||||||||||||||||||    
T  19703533 cttgggacctgagagtgtgctcctcctcaaggtct 19703499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 23361697 - 23361661
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||| || |||||||||||||||||||||||    
T  23361697 gacttgggatatgggagtgtgctcctcctcaaggtct 23361661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 84854 - 84888
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||| |||||||||||||||||||||||    
T  84854 cttgggatctgggagtgtgctcctcctcaaggtct 84888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 14495853 - 14495817
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  14495853 gacttgggatctgggagtgtgctcctcctcgaggtct 14495817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 7975448 - 7975482
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||| |||||||||||||||||||||||    
T  7975448 cttgggatctgggagtgtgctcctcctcaaggtct 7975482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 30311336 - 30311370
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||| |||||||||||||||||||||||    
T  30311336 cttgggatctgggagtgtgctcctcctcaaggtct 30311370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 28928925 - 28928896
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaa 348  Q
    ||||||||||||||||||||||||||||||    
T  28928925 cttgggatctgagagtgtgctcctcctcaa 28928896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 4844559 - 4844523
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  4844559 gacttgggatctgggagtgtgctcctcctcgaggtct 4844523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 4870255 - 4870219
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  4870255 gacttgggatctgggagtgtgctcctcctcgaggtct 4870219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 5499455 - 5499419
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||| |||||||||||||||||||||| |||||||    
T  5499455 gacttgagatctgagagtgtgctcctccttaaggtct 5499419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 39253725 - 39253761
Alignment:
Q  317 gacttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  39253725 gacttgggatctgggagtgtgctcctcttcaaggtct 39253761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 46518658 - 46518690
Alignment:
Q  319 cttgggatctgagagtgtgctcctcctcaaggt 351  Q
    ||||||||||| |||||||||||||||||||||    
T  46518658 cttgggatctgggagtgtgctcctcctcaaggt 46518690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 28363968 - 28364001
Alignment:
Q  320 ttgggatctgagagtgtgctcctcctcaaggtct 353  Q
    |||||||||| |||||||||||||||||||||||    
T  28363968 ttgggatctgcgagtgtgctcctcctcaaggtct 28364001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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