View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_3 (Length: 611)
Name: NF16975_low_3
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 3805722 - 3806236
Alignment:
| Q |
1 |
agtaaccaagaacaccaatattatttcacaataagaacagcatacactggtcttcgtgtcgacactttttgtcatttatggttcaaactgttgcaaaata |
100 |
Q |
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| T |
3805722 |
agtaaccaagaacaccaatattatttcacaataagaacagcatacactagtcttcgtgtcgacactttttgtcatttatggttcaaactgttgcgaaata |
3805821 |
T |
|
| Q |
101 |
cagtagaatacaatactcaaaccaaagacaatagaatttgttgtgtcgtgaaaaccagtatcctgaaagcgaattcggcaagaactcggtgcaatttaaa |
200 |
Q |
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| T |
3805822 |
cagtagaatacaatactcaaaccaaagacaatagaatttgttgtgtcgtgaaaaccagtatcctgaaagcgaattcggcaagaactcggtgcaatttaaa |
3805921 |
T |
|
| Q |
201 |
agccgagccctatgaacacatgcacttgtggtctgggtatgaaaagcacagcacaatttgcccaaataattgataattgaaagaaagaaaaaatactaag |
300 |
Q |
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| T |
3805922 |
c-cagtattctatgaacacatgcacttgtggtctgggtatgaaaagcacagaacaatttgcccaaataattgataagtgaaagaaagaaaaaatactaag |
3806020 |
T |
|
| Q |
301 |
aagagaacagattctgcttannnnnnngaagtatgtgctcttttttataaagtctaaagtcaaaactgcatccctatttttatgtaacagaactatcaca |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
3806021 |
aagagaacagattctgcttatttttttgaagtatgtgctcttttttataaagtctaaagtcaaaactgcatccctattttcatgcaacagaactatcaca |
3806120 |
T |
|
| Q |
401 |
actcatcacatattaaaatgagacctaataataaggagttgccaaactgattggaaacaaataataagcatttcgtgccatctcttccacttgttagctt |
500 |
Q |
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| T |
3806121 |
actcatcacatattaaaatgagacctaataataaggagttgccaaactgattggaaacaaataataagcatttcgtgccatctcttccacttgttagctt |
3806220 |
T |
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| Q |
501 |
ctcaattctcaattgc |
516 |
Q |
| |
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|||||||||||||||| |
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| T |
3806221 |
ctcaattctcaattgc |
3806236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 395227 - 395142
Alignment:
| Q |
4 |
aaccaagaacaccaatattatttcacaataagaacagcatacactggtcttcgtgtcgacactttttgtcatttatggttcaaact |
89 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
395227 |
aaccaagaacaccaaaatgatttcacaataagaacagcatacacgagtcttcgtgttgacactttttgtcatttatggttcaaact |
395142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 510
Target Start/End: Original strand, 14911924 - 14911955
Alignment:
| Q |
479 |
catctcttccacttgttagcttctcaattctc |
510 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14911924 |
catctcttccacttgttagcttctcaattctc |
14911955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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