View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_low_30 (Length: 338)

Name: NF16975_low_30
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_low_30
NF16975_low_30
[»] chr6 (3 HSPs)
chr6 (21-322)||(14713798-14714120)
chr6 (206-321)||(14754439-14754554)
chr6 (121-183)||(29263783-29263845)
[»] chr1 (1 HSPs)
chr1 (120-174)||(2749165-2749219)
[»] chr3 (1 HSPs)
chr3 (206-304)||(4303928-4304026)
[»] chr8 (1 HSPs)
chr8 (120-162)||(37507613-37507655)
[»] chr4 (1 HSPs)
chr4 (121-162)||(53689083-53689124)
[»] chr7 (1 HSPs)
chr7 (142-170)||(35424867-35424895)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 14713798 - 14714120
Alignment:
Q  21 atataatataaaagtaaggccattatttttgtcatctgatgatttttcgggcgtcctatttagagtataaattcgaaatattttaacttactttaaaaag 120  Q
    ||||||||||  |||||||| ||||||||||||||| ||| |||||||| |||||||||||||| ||||| | | |||||||||||||| ||||  ||||    
T  14713798 atataatatacgagtaaggctattatttttgtcatcagataatttttcgcgcgtcctatttagattataattccaaaatattttaacttgcttttgaaag 14713897  T
Q  121 tttttatggggcatttatgttgttcagattctataatccaaactacatagagcacgcaagaa---------------------gtagtctgaatgtaata 199  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||                     ||| |||||||||||||    
T  14713898 tttttatgggacatttatgttgttcggattctataatccaaactgcatagagcaagcaagaaactcataggatggaaaaagaagtactctgaatgtaata 14713997  T
Q  200 gcattgcacataccattgttgtggctttgatgacagtatccgaatcaaacccatgaatgtttgttccatcaatagtagaaagcatcacatccatgaaatc 299  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14713998 gtattgcacataccattgttgtggctttgatgacagtatccgaatgaaacccatgaatgtttgttccatcaatagtagaaagcatcacatccatgaaatc 14714097  T
Q  300 ttgatcctctttactcttatcaa 322  Q
    |||| ||||||||||||||||||    
T  14714098 ttgaccctctttactcttatcaa 14714120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 14754439 - 14754554
Alignment:
Q  206 cacataccattgttgtggctttgatgacagtatccgaatcaaacccatgaatgtttgttccatcaatagtagaaagcatcacatccatgaaatcttgatc 305  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| || ||||| |||||    
T  14754439 cacataccattgttgtggctttgatgatagtatccgaatcaaacccatgaatgtttgttccgtcgattgtagaaagcataacatcaataaaatcatgatc 14754538  T
Q  306 ctctttactcttatca 321  Q
    | ||||||||||||||    
T  14754539 ccctttactcttatca 14754554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 29263845 - 29263783
Alignment:
Q  121 tttttatggggcatttatgttgttcagattctataatccaaactacatagagcacgcaagaag 183  Q
    ||||||| |||  ||||||| ||||||||||||||||| |||| |||||||||| ||||||||    
T  29263845 tttttattgggtgtttatgtcgttcagattctataatctaaaccacatagagcatgcaagaag 29263783  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 2749219 - 2749165
Alignment:
Q  120 gtttttatggggcatttatgttgttcagattctataatccaaactacatagagca 174  Q
    |||||||||||||||||||| ||||| |||||||||||||||| | |||||||||    
T  2749219 gtttttatggggcatttatggtgttcggattctataatccaaattgcatagagca 2749165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 4304026 - 4303928
Alignment:
Q  206 cacataccattgttgtggctttgatgacagtatccgaatcaaacccatgaatgtttgttccatcaatagtagaaagcatcacatccatgaaatcttgat 304  Q
    ||||||||| | ||||||||||||| || ||||| |||||||| || | |||  ||||||||||||     |||||||||||||||||||| |||||||    
T  4304026 cacataccagtattgtggctttgattacggtatcagaatcaaatccttcaattgttgttccatcaagcaatgaaagcatcacatccatgaagtcttgat 4303928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 37507613 - 37507655
Alignment:
Q  120 gtttttatggggcatttatgttgttcagattctataatccaaa 162  Q
    |||||||||||| |||||||| ||||||||||||||| |||||    
T  37507613 gtttttatggggtatttatgtcgttcagattctataaaccaaa 37507655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 53689083 - 53689124
Alignment:
Q  121 tttttatggggcatttatgttgttcagattctataatccaaa 162  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  53689083 tttttatggggtgtttatgtcgttcagattctataatccaaa 53689124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 35424895 - 35424867
Alignment:
Q  142 gttcagattctataatccaaactacatag 170  Q
    |||||||||||||||||||||||||||||    
T  35424895 gttcagattctataatccaaactacatag 35424867  T

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