View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_31 (Length: 331)
Name: NF16975_low_31
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 19894007 - 19893710
Alignment:
| Q |
16 |
aatataaaatcatatatggtatgtagatcttatcctagtgactttagttatggacataccataaatgtggaatgtatttctccataacgtgactcacaaa |
115 |
Q |
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| T |
19894007 |
aatataaaatcatatatggtatgtagatcttatcctagtgactttagttatggacataccataaatgtggaatgtatttctccataacgtgactcacaaa |
19893908 |
T |
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| Q |
116 |
ttcttgcgtacttatcctttgtcttcataaatcttgataagtatcgaacaagttatcacattggattgaattggataggataatgcttcattagcctaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19893907 |
ttcttgcgtacttatcctttgtcttcataaatcttgataagtatcgaacaagttatcacattggattgaattggataggataatgcttcattagcctaaa |
19893808 |
T |
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| Q |
216 |
taaaatccccatcattgagatgcttcatatattttaattacttaataaaatatacaatggaatgatattagaacaaccaattttataagagtggtagg |
313 |
Q |
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| T |
19893807 |
taaaatccccatcattgagatgcttcatatattttaattacttaataaaatatacaatggaatgatattagaacaaccaattttataagagtggtagg |
19893710 |
T |
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