View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_33 (Length: 325)
Name: NF16975_low_33
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 25534668 - 25534456
Alignment:
| Q |
1 |
aatgatgaatcaaaggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaagctacaccctaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25534668 |
aatgatgaatcaaaggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactgagctacaccctaa |
25534569 |
T |
|
| Q |
101 |
gcatattttgtctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttctatgccctttta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534568 |
gcatattttgtctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttctatgccctttta |
25534469 |
T |
|
| Q |
201 |
gatccaaacaaac |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
25534468 |
gatccaaacaaac |
25534456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 25526665 - 25526452
Alignment:
| Q |
1 |
aatgatgaatcaaagg-attctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaagctacacccta |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25526665 |
aatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaagctacacccta |
25526566 |
T |
|
| Q |
100 |
agcatattttgtctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttctatgccctttt |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526565 |
agcatattttgtctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttctatgccctttt |
25526466 |
T |
|
| Q |
200 |
agatccaaacaaac |
213 |
Q |
| |
|
|||||||||||||| |
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|
| T |
25526465 |
agatccaaacaaac |
25526452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 25515790 - 25515864
Alignment:
| Q |
4 |
gatgaatcaaag-gattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacatttt |
77 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
25515790 |
gatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtatgacatttt |
25515864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 25515876 - 25515970
Alignment:
| Q |
122 |
caatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagctt----ctatgcccttttagatccaaacaaa |
212 |
Q |
| |
|
||||||||||| |||||| ||| ||||| | ||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||| |
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|
| T |
25515876 |
caatatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatgtagctagctactatgccctttcagatccaaacaaa |
25515970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 77
Target Start/End: Complemental strand, 25541120 - 25541089
Alignment:
| Q |
46 |
ctacatcctaacatttaacagtaggacatttt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
25541120 |
ctacatcctaacatttaacagtaggacatttt |
25541089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 7946706 - 7946623
Alignment:
| Q |
4 |
gatgaatcaaagg-attctgaatccaatcccaaaaggaaagcactacatcctaa-catttaacagtaggacattttacataaac |
85 |
Q |
| |
|
||||||||||||| || |||| |||||||| ||||| ||| ||||| ||||||| ||||||| |||||||||||||||| |||| |
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| T |
7946706 |
gatgaatcaaagggatcctgattccaatccaaaaagaaaatcactaaatcctaaacatttaatagtaggacattttacacaaac |
7946623 |
T |
|
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