View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_low_34 (Length: 320)

Name: NF16975_low_34
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_low_34
NF16975_low_34
[»] chr6 (13 HSPs)
chr6 (1-310)||(30955034-30955341)
chr6 (1-310)||(30944774-30945081)
chr6 (1-285)||(31145525-31145807)
chr6 (1-285)||(31171838-31172120)
chr6 (1-280)||(30992261-30992538)
chr6 (1-277)||(31201398-31201672)
chr6 (1-280)||(30960779-30961056)
chr6 (1-300)||(31224284-31224581)
chr6 (1-285)||(31189583-31189865)
chr6 (1-300)||(31214015-31214312)
chr6 (1-185)||(30986097-30986279)
chr6 (1-272)||(31229565-31229833)
chr6 (1-104)||(31131490-31131593)
[»] chr7 (6 HSPs)
chr7 (193-271)||(31618457-31618535)
chr7 (157-277)||(31585591-31585711)
chr7 (195-268)||(31438982-31439055)
chr7 (195-271)||(31541209-31541285)
chr7 (199-274)||(31608444-31608519)
chr7 (193-271)||(31572804-31572881)
[»] chr1 (5 HSPs)
chr1 (199-280)||(9233930-9234011)
chr1 (195-277)||(49725148-49725230)
chr1 (195-277)||(49728570-49728652)
chr1 (199-280)||(9384383-9384464)
chr1 (199-271)||(11011057-11011129)
[»] chr8 (1 HSPs)
chr8 (146-274)||(44035593-44035721)
[»] chr4 (1 HSPs)
chr4 (195-274)||(15063329-15063408)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 30955034 - 30955341
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30955034 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaataagggacctgaaa 30955133  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    ||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955134 ccattgcatctttgagttgggataatttctatcaaattgcca--aagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 30955231  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaagagagca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955232 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaagagagca 30955331  T
Q  301 ctatattcat 310  Q
    ||||||||||    
T  30955332 ctatattcat 30955341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 30944774 - 30945081
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30944774 cttcttggattttgttttgaaggttgtaataaagctctcgtatatgaatttatgtctaatggttcccttgacaaatttatttacaataagggacctgaaa 30944873  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    ||||||||||||| ||| ||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  30944874 ccattgcatctttaagttgggataatttgtatcaaattgcca--aagggatagctcgaagtttggagtatttgcatagggggtgtaatatccggatttta 30944971  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaagagagca 300  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30944972 cattttgacataaaaccgcataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcaagaaagagagca 30945071  T
Q  301 ctatattcat 310  Q
    |||| |||||    
T  30945072 ctattttcat 30945081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31145807 - 31145525
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||    || ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  31145807 cttcttggattttgttttgaaggcacaaaaaaagcactcatatatgaatttatgtccaatggttcacttgacaaatttatttacaataagggacctgaaa 31145708  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    | ||||||||||||||| |||| ||||||||||||||||| |  ||||||||||||| ||  | ||||| |||||||| |||||||  || || ||||||    
T  31145707 caattgcatctttgagttgggagaatttgtatcaaattgcaa--aagggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaatttta 31145610  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtc 285  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  31145609 cattttgacataaaaccacataacattcttttagatgaaaacttatgtccaaagatttcagattttggacttgcaaaactctgtc 31145525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31172120 - 31171838
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||    || ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  31172120 cttcttggattttgttttgaaggcacaaaaaaagcactcatatacgaatttatgtcaaatggttctcttgacaaatttatttacaataagggacctgaaa 31172021  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    | ||||||||||||||| |||| ||||||||||||||||| |  ||||||||||||| ||  | ||||| |||||||| |||||||  || || ||||||    
T  31172020 caattgcatctttgagttgggagaatttgtatcaaattgcaa--aagggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaatttta 31171923  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtc 285  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  31171922 cattttgacataaaaccacataacattcttttagatgaaaacttatgtccaaagatttcagattttggacttgcaaaactctgtc 31171838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 30992261 - 30992538
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  30992261 cttcttggattttgttttgaaggttgtaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatatacaataaggaacctgaaa 30992360  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    | ||||||||||| ||| |||||||| || ||||||||||   ||||||||||| || ||  | || ||||||||||| ||||||   || || ||||||    
T  30992361 cgattgcatctttaagttgggataatatgcatcaaattgc--gaaagggatagcccgtgggctagaatatttgcatagaggatgtgccactcgaatttta 30992458  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagct 280  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  30992459 cattttgacataaaaccacataacattcttttagatgagaatttttgtccaaagatctcagattttggactggcaaagct 30992538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 31201672 - 31201398
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||    || ||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||| ||||    
T  31201672 cttcttggattttgttttgaaggcacaaaaaaagcactcatatatgaatttatgtccaatggttctcttgacaaacttatttacaataagggaccagaaa 31201573  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    ||||||||||||||||| ||||||||||||||||||||||   ||||| |||||||| ||  | ||||| |||||||| |||||||  || || ||||||    
T  31201572 ccattgcatctttgagttgggataatttgtatcaaattgc--aaaaggaatagctcgtggactagagtacttgcatagaggatgtaccactcgaatttta 31201475  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaa 277  Q
    ||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  31201474 catttcgacataaaaccacataatattcttttagatgagaatttttgtccaaagatttcagattttggacttgcaaa 31201398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 30960779 - 30961056
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||  | || ||||||||  |||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||    
T  30960779 cttcttggattttgttttgaaggccgtaaaaaagctcttgtatatgaatttatgtccaatggttctcttgacaaatatatttacaataagggacctgaaa 30960878  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    |||||| |||||| ||| ||||| || || ||||||||||   ||||||||||| || ||  | || ||||||||||| ||||||  ||| || ||||||    
T  30960879 ccattgtatctttaagttgggatgatatgcatcaaattgc--gaaagggatagcccgtgggctagaatatttgcatagaggatgtgctactcgaatttta 30960976  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagct 280  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  30960977 cattttgacataaaaccacataacattcttttagatgagaatttttgtccaaagatctcagattttggactggcaaagct 30961056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 31224284 - 31224581
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||   ||| ||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||| ||| || |||||    
T  31224284 cttcttggattttgttttgaaggcaacaaaaaagctctcgtatatgaatttatgtcaaatggttctcttgacaaatttatctacaataaggaacttgaaa 31224383  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    | ||||||||||||||| ||||||| |||||| |||||||   |||||||||||||| ||  | ||||| |||||| | |||||||  ||  | ||||||    
T  31224384 caattgcatctttgagttgggataaattgtataaaattgc--aaaagggatagctcgtggactagagtacttgcatggaggatgtaccactagaatttta 31224481  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaagagagca 300  Q
    |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||  |||||| ||||    
T  31224482 cattttgacataaaaccacacaacatccttttagatgataatttatgtccgaagatttcagattttggacttgcaaaactatgtctcaggaaagaaagca 31224581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31189865 - 31189583
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||    || ||||| || ||||||||||||||||| |||||||| |||||||||||||| |||||  ||||||| || |    
T  31189865 cttcttggattttgttttgaaggcaaaaaaaaagcacttatatatgaatttatgtcaaatggttctcttgacaaatttatctacaacaagggaccagaga 31189766  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
      ||| ||||||||||| |||||||||||||||||||||| |  |||||||||| || ||  | ||||| |||||||| |||||||  ||  | ||||||    
T  31189765 gaattacatctttgagttgggataatttgtatcaaattgcaa--aagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaatttta 31189668  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtc 285  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||    
T  31189667 catttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtc 31189583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 31214015 - 31214312
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||| ||| |||| ||||| || || |||||||| |||||||||||||| |||||||||||||||||||| | |  || |||||    
T  31214015 cttcttggattttgttttgacggtcgcaaaaaagccctgatctatgaattcatgtctaatggttcgcttgacaaatttatttacaacgcgcaacatgaaa 31214114  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
    ||  |  |||| ||||| |||| | | | ||| ||||||| |  |||||||||||||||| ||||||||  ||||||| ||||| | ||| || ||||||    
T  31214115 cctatcaatctctgagttgggagattctttatgaaattgcta--aagggatagctcgagggttggagtacctgcatagaggatgcagtactcgaatttta 31214212  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaagagagca 300  Q
    ||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||| |||||||||||||||||||  || |||||| ||||||| ||||    
T  31214213 cattttgatataaaaccacataatattttattagatgaaaatttttgtccaaagatatcagattttggacttgcaagactttgtctcaagaaagaaagca 31214312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 30986097 - 30986279
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  30986097 cttcttggattttgttttgaaggttgtaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatatacaataaggaacctgaaa 30986196  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgt 185  Q
    | ||||||||||| ||| |||||||| || ||||||||||   ||||||||||| || ||  | || ||||||||||| ||||||    
T  30986197 cgattgcatctttaagttgggataatatgcatcaaattgc--gaaagggatagcccgtgggctagaatatttgcatagaggatgt 30986279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 31229565 - 31229833
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    |||||||||||||||||||||||  | || ||||||||||| |||||||| ||||| |||||||||||||| ||||| || |||||  |||||||||| |    
T  31229565 cttcttggattttgttttgaaggacggaaaaaagctctcatttatgaattaatgtcgaatggttcccttgaaaaattcatctacaaaaagggacctgaga 31229664  T
Q  101 ccattgcatctttgagtggggataatttgtatcaaattgccacaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggatttta 200  Q
     |||| ||||| ||||| |||| | | | |||||||||||   |||||||||||||||||  | ||||| ||||||| ||||||||  ||  | || |||    
T  31229665 -cattccatctctgagttgggacattctttatcaaattgc--gaaagggatagctcgagggcttgagtacttgcataagggatgtagcacttgaatctta 31229761  T
Q  201 cattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggactt 272  Q
    |||||||| || |||||||||||||| || ||| |||| ||||| ||||||||||| |||||||||||||||    
T  31229762 cattttgacatcaaaccacataacatcctcttatatgagaatttttgtccaaagatatcagattttggactt 31229833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31131593 - 31131490
Alignment:
Q  1 cttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaa 100  Q
    ||||||||||||||||  |||||   ||| ||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||     
T  31131593 cttcttggattttgttacgaaggcaccaaaaaagctcttgtatatgaatttatgtctaatggttctcttgacaaatttatctacaataagggacctgaat 31131494  T
Q  101 ccat 104  Q
    ||||    
T  31131493 ccat 31131490  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 31618535 - 31618457
Alignment:
Q  193 ggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 271  Q
    ||||| ||||| ||||||||||||| || ||||||||||| |||||| |||| |||||||| || ||||||||||||||    
T  31618535 ggattctacatcttgatataaaacctcaaaacattcttttggatgaagatttttgtccaaaaatctcagattttggact 31618457  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 31585711 - 31585591
Alignment:
Q  157 gaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagat 256  Q
    ||||||| ||||||||||||   ||||||| | |  ||||| | ||| ||||||| ||||| || ||||||||||| |||||| |||| |||||||| ||    
T  31585711 gaggtttagagtatttgcatcaaggatgtagttcgaggattctgcatcttgatatcaaaccccaaaacattcttttggatgaagatttttgtccaaaaat 31585612  T
Q  257 ttcagattttggacttgcaaa 277  Q
     || ||||||||||| |||||    
T  31585611 atctgattttggactagcaaa 31585591  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 31438982 - 31439055
Alignment:
Q  195 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttgg 268  Q
    ||||| ||| ||||||| ||||| || |||||||||||||||||| |||| |||||||| || || ||||||||    
T  31438982 attttgcatcttgatatcaaacctcaaaacattcttttagatgaagatttttgtccaaaaatatctgattttgg 31439055  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 31541285 - 31541209
Alignment:
Q  195 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 271  Q
    ||||| ||| ||||||| |||||||| ||||||||||| ||||||||||| || || || || || |||||||||||    
T  31541285 attttgcatcttgatatcaaaccacaaaacattcttttggatgaaaatttttgccccaaaatctctgattttggact 31541209  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 31608519 - 31608444
Alignment:
Q  199 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgc 274  Q
    ||||| ||||||| ||||| || ||||||||||| |||||| | || |||||||| || || ||||||||||||||    
T  31608519 tacatcttgatatcaaacctcaaaacattcttttggatgaagacttttgtccaaaaatatctgattttggacttgc 31608444  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 31572804 - 31572881
Alignment:
Q  193 ggattttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 271  Q
    ||||||| ||| ||||||||||||| || ||||||||||| |||||| |||| || ||||| || || |||||||||||    
T  31572804 ggattttgcatcttgatataaaacc-caaaacattcttttggatgaagatttttgcccaaaaatctctgattttggact 31572881  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 9233930 - 9234011
Alignment:
Q  199 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagct 280  Q
    ||||||||||||| || || ||||| |||||| |||| ||| ||||   ||||||| |||| ||||||||||||||||||||    
T  9233930 tacattttgatatcaagcctcataatattcttctagacgaagatttcgttccaaaggtttcggattttggacttgcaaagct 9234011  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 49725148 - 49725230
Alignment:
Q  195 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaa 277  Q
    ||||| |||||||| |||||||| |||||||||||||| ||||| |||||    || |  ||||| |||||||||||||||||    
T  49725148 attttgcattttgacataaaacctcataacattcttttggatgagaatttcaaccccagaatttcggattttggacttgcaaa 49725230  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 49728570 - 49728652
Alignment:
Q  195 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaa 277  Q
    ||||||||||||||||||||||| ||||| ||  |  |||| ||  |||| ||||| ||| |||| |||||||||||||||||    
T  49728570 attttacattttgatataaaacctcataatatattgctagacgatgatttttgtcctaaggtttcggattttggacttgcaaa 49728652  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 9384464 - 9384383
Alignment:
Q  199 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagct 280  Q
    ||||||||||||| || || ||||| |||||| |||| ||| | ||   ||||||| |||| ||||||||||||||||||||    
T  9384464 tacattttgatatcaagcctcataatattcttctagacgaagagtttgttccaaaggtttcggattttggacttgcaaagct 9384383  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 11011129 - 11011057
Alignment:
Q  199 tacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggact 271  Q
    |||| ||||||||||| || |||||||||||| | |||||||||||   ||||||  |||| |||||||||||    
T  11011129 tacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaaagtttctgattttggact 11011057  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 44035593 - 44035721
Alignment:
Q  146 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaattta 245  Q
    |||||||||||||||  | ||||| |||||||  || || || ||  ||||||| ||||| || || |||||||||||||||||||| || |||| ||      
T  44035593 agggatagctcgaggactagagtacttgcataaagggtgcaacactaggatttttcatttcgacattaaaccacataacattcttttggacgaaacttac 44035692  T
Q  246 tgtccaaagatttcagattttggacttgc 274  Q
     |||| ||||| || ||||||||||||||    
T  44035693 cgtcccaagatatctgattttggacttgc 44035721  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 15063329 - 15063408
Alignment:
Q  195 attttacattttgatataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgc 274  Q
    ||||| ||| ||||||| ||||| || |||||||||||||||||| |||| || ||||| || || |||||||| |||||    
T  15063329 attttgcatcttgatatcaaacctcaaaacattcttttagatgaagatttttgcccaaaaatatctgattttggtcttgc 15063408  T

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