View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16975_low_36 (Length: 305)
Name: NF16975_low_36
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 38316381 - 38316108
Alignment:
| Q |
13 |
aaaataatactatataaacttgaatgtaaatacagggacataatcgtccacgcacacgaaaagcgaggcgcaatacgcatcacgctaacaatataactcg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316381 |
aaaataatactatataaacttgaatgtaaatacagggacataatcgtccacgcacacgaaaagcgaggcgcaatacgcatcacgctaacaatataactcg |
38316282 |
T |
|
| Q |
113 |
aagtctgttttgctctgttcccgcctctttattttcacagcttcgaatcatacatagctcacgaaattcacacacgcttttcaaacataaaatcaaattc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316281 |
aagtctgttttgctctgttcccgcctctttattttcacagcttcgaatcatacatagctcacgaaattcacacacgcttttcaaacataaaatcaaattc |
38316182 |
T |
|
| Q |
213 |
accactccattcaatttctcattccaccgaaaattccaaatctctctcacacttcacttcacgaatatcagagc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38316181 |
accactccattcaatttctcattccaccgaaaattccaaatctctctcacacttcacttcacgaatatcagagc |
38316108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University