View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16975_low_37 (Length: 301)
Name: NF16975_low_37
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 42535194 - 42535476
Alignment:
| Q |
1 |
gcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaatgccaaggtcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535194 |
gcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaatgccaaggtcct |
42535293 |
T |
|
| Q |
101 |
aacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgattggatcaacatc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535294 |
aacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgattggatcaacatc |
42535393 |
T |
|
| Q |
201 |
acttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagt |
283 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535394 |
agttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagt |
42535476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 278
Target Start/End: Original strand, 42529474 - 42529749
Alignment:
| Q |
3 |
attgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaatgccaaggtcctaa |
102 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| ||| |
|
|
| T |
42529474 |
attgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgtaaaatttgatgatgttaatgtcaaggtcttaa |
42529573 |
T |
|
| Q |
103 |
cctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgattggatcaacatcac |
202 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
42529574 |
cctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatactcgttttcatttagcaatgttcaacggatcaacatcag |
42529673 |
T |
|
| Q |
203 |
ttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggc |
278 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42529674 |
ttctggcatcatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggc |
42529749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 27824597 - 27824671
Alignment:
| Q |
205 |
ctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggca |
279 |
Q |
| |
|
|||||||||||||||| || ||||| ||| |||||| ||||||||| | || |||||||||||||||||||||| |
|
|
| T |
27824597 |
ctggcatcatgttattaatattcaatagagcaagtggtcatattccactgaaaattatatccattgaggatggca |
27824671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 27822153 - 27822207
Alignment:
| Q |
67 |
ttgtgaaatttgatgatgttaatgccaaggtcctaacctactctccgcaagatag |
121 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||||| |||| ||||| |
|
|
| T |
27822153 |
ttgtggaatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 27822084 - 27822138
Alignment:
| Q |
10 |
acataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
64 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||||| ||||| |||||||| |
|
|
| T |
27822084 |
acataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 27822302 - 27822347
Alignment:
| Q |
120 |
agtatattcaaggtttttgatcttaaaaactacacttttctatact |
165 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatact |
27822347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University