View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_low_38 (Length: 298)

Name: NF16975_low_38
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_low_38
NF16975_low_38
[»] chr8 (1 HSPs)
chr8 (12-280)||(42759799-42760067)
[»] chr5 (1 HSPs)
chr5 (16-280)||(1401781-1402045)
[»] chr4 (2 HSPs)
chr4 (200-278)||(37341958-37342036)
chr4 (186-228)||(56478858-56478900)
[»] chr2 (2 HSPs)
chr2 (200-278)||(4814639-4814717)
chr2 (200-278)||(25890428-25890506)
[»] chr7 (3 HSPs)
chr7 (200-278)||(23487027-23487105)
chr7 (200-278)||(23485516-23485594)
chr7 (186-230)||(11646513-11646557)
[»] chr6 (1 HSPs)
chr6 (186-265)||(445546-445625)
[»] chr3 (2 HSPs)
chr3 (200-274)||(50717264-50717338)
chr3 (200-274)||(50795510-50795584)
[»] chr1 (1 HSPs)
chr1 (186-228)||(23261040-23261082)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 42759799 - 42760067
Alignment:
Q  12 acagatggatagatgtgttggttttcaaaacgaaagttcaatagcccttaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaataca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42759799 acagatggatagatgtgttggttttcaaaacgaaagttcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaataca 42759898  T
Q  112 aactaaatgaaaaactaaaggtttacataaaacacggtaaactaagcataccacaataattgcattattttgaattcaaacagccaaatactttggagcc 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759899 aactaaatgaaaaactaaaggtttacataaaacaaggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactttggagcc 42759998  T
Q  212 aaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaact 280  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759999 aaattattttagggctaacagattagcattaattgctgctaatttggctccaaatctttagggttaact 42760067  T

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Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 1402045 - 1401781
Alignment:
Q  16 atggatagatgtgttggttttcaaaacgaaagttcaatagcccttaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  1402045 atggatagatgtgttggttttcaaaacgaaagttcaatagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaact 1401946  T
Q  116 aaatgaaaaactaaaggtttacataaaacacggtaaactaagcataccacaataattgcattattttgaattcaaacagccaaatactttggagccaaat 215  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1401945 aaatggaaaactaaaggtttacataaaacacggtaaactaagcagaccacaataattgcattattttgaattcaaacagtcaaatactttggagccaaat 1401846  T
Q  216 tattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaact 280  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401845 tattttaaggttaactcattagcattaattgctgctaatttggctccaaatctttagggttaact 1401781  T

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Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 37341958 - 37342036
Alignment:
Q  200 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 278  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  37341958 tactttgtagccaaattattttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaa 37342036  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 56478858 - 56478900
Alignment:
Q  186 ttcaaacagccaaatactttggagccaaattattttagggtta 228  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  56478858 ttcaaacagccaaatactttggagccaaattttttaagggtta 56478900  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 4814717 - 4814639
Alignment:
Q  200 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 278  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4814717 tactttggagccaaatttttttagggttagcttattagcattaattgctgctaatttggctccaaatctttagggttaa 4814639  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 25890428 - 25890506
Alignment:
Q  200 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 278  Q
    ||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  25890428 tactttgtagccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaa 25890506  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 23487105 - 23487027
Alignment:
Q  200 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 278  Q
    ||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  23487105 tactttgaagccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatttttagggttaa 23487027  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 23485594 - 23485516
Alignment:
Q  200 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 278  Q
    ||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||| ||||| |||| |||||||||||    
T  23485594 tactttgaagccaaatttttttagggttaacttattagcattaattgctgctaattcggctcgaaatttttagggttaa 23485516  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 11646513 - 11646557
Alignment:
Q  186 ttcaaacagccaaatactttggagccaaattattttagggttaac 230  Q
    |||||||| ||||||||||||  || |||||||||||||||||||    
T  11646513 ttcaaacaaccaaatactttgaggcgaaattattttagggttaac 11646557  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 445546 - 445625
Alignment:
Q  186 ttcaaacagccaaatactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaa 265  Q
    ||||||||||||||||||||||||||||| | | |||||||||||   || |||||||||||||||||||||||||||||    
T  445546 ttcaaacagccaaatactttggagccaaaatttcttagggttaactcgttggcattaattgctgctaatttggctccaaa 445625  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 50717338 - 50717264
Alignment:
Q  200 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 274  Q
    ||||||| ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50717338 tactttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50717264  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 50795510 - 50795584
Alignment:
Q  200 tactttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 274  Q
    ||||||| ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50795510 tactttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50795584  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 23261082 - 23261040
Alignment:
Q  186 ttcaaacagccaaatactttggagccaaattattttagggtta 228  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  23261082 ttcaaacagccaaatactttggagccaaattttttaagggtta 23261040  T

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