View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_4 (Length: 528)
Name: NF16975_low_4
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Complemental strand, 3218074 - 3217568
Alignment:
| Q |
13 |
atttttctctcatccttttcaagtgttccaatcacaaggccccacnnnnnnnaacttcaaaatctctacatggactcactccagaaactagacctctcag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3218074 |
atttttctctcatccttttcaagtgttccaatcacaaggccccactttctttaacttcaaaatctctacatggactcactccagaaactagacctctcag |
3217975 |
T |
|
| Q |
113 |
tttttatatttctcaatcttagtttccatgcagataaccactagttttcgtagtttgttatcctaactcgaggactaaattgtatagagagtggtggtat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3217974 |
tttttatatttctcaatcttagtttccatgcagataaccactagttttcgtagtttgttatcctaactcaaggactaaattgtatagagagtggtggtat |
3217875 |
T |
|
| Q |
213 |
ttctctcttctctaataccaattaagcacacatggttgtttgatagtgcgtataataagtgtcagttgtgcattgttgaggacttctccatctgaaatga |
312 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3217874 |
ttctctcttctctaataccaattaagcacacatgcttgtttgatagtgcgtataataagtgtcagttgtgtattgttgaggacttctccatctgaaatga |
3217775 |
T |
|
| Q |
313 |
aatataagtaaaaatagtttatagtatttagaataaaatatgagcaaaagttaaagacttctcttatattgaatgatagtacttctaaattatacctcag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217774 |
aatataagtaaaaatagtttatagtatttagaataaaatatgagcaaaagttaaagacttctcttatattgaatgatagtacttctaaattatacctcag |
3217675 |
T |
|
| Q |
413 |
tttatttaattaacttatcatatttaatcatttttgcttctaaattcccttaatcttcagtaattccctatgtacgattatcatttacacacatgcctat |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
3217674 |
tttatttaattaacttatcatatttaatcatttttgcttctaatttcccttaatcttcagtaattccctatgtacgattatcattaacacacatgcccat |
3217575 |
T |
|
| Q |
513 |
gcttctc |
519 |
Q |
| |
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| ||||| |
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| T |
3217574 |
gattctc |
3217568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 3223169 - 3223115
Alignment:
| Q |
95 |
agaaactagacctctcagtttttatatttctcaatcttagtttccatgcagataa |
149 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3223169 |
agaagctagacctctcagtttatatatttctcaatcttagtttccatgcagataa |
3223115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 49664797 - 49664876
Alignment:
| Q |
71 |
aaaatctctacatggactcactccagaaactagacctctcagtttttatatttctcaatcttagtttccatgcagataac |
150 |
Q |
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||||| ||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
49664797 |
aaaatttcttcatggactaactccagaatctagacctctcagttttgatatttctcaatcttagtttccatgcatataac |
49664876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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