View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_44 (Length: 252)
Name: NF16975_low_44
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 43756693 - 43756919
Alignment:
| Q |
20 |
taaaatcacatgcttctcaggtaagcgttagcaattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttatta |
119 |
Q |
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| T |
43756693 |
taaaatcacatgcttctcaggtaagcgttagcaattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacttcaatctctttatta |
43756792 |
T |
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| Q |
120 |
cttcactttgcaattttttcatcaagtcaccaagtcaactttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatga |
219 |
Q |
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| T |
43756793 |
cttcactttgcaattttttcatcaagtcaccaagtcaactttatatccccaattaatgtgttatattggtgggagagttggacacctgacatttttatga |
43756892 |
T |
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| Q |
220 |
ttcatacctctataacattcttctcac |
246 |
Q |
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| T |
43756893 |
ttcatacctctataacattcttatcac |
43756919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 13333804 - 13333993
Alignment:
| Q |
51 |
caattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattttttcatcaagtcacc |
150 |
Q |
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| T |
13333804 |
caattaatactagtattgtctttgtataatatgctaagggtggagatcgaaacctcaatctctttattacttcactttgcaattttttcattgaatcacc |
13333903 |
T |
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| Q |
151 |
aagtcaactttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataacattct |
240 |
Q |
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| T |
13333904 |
atgtcaagtttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatctttcatacctctataacattct |
13333993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 13334520 - 13334336
Alignment:
| Q |
51 |
caattaatactagtattgtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattttttcatcaagtcacc |
150 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| || || |
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| T |
13334520 |
caattaatactagtattgtctgtgtatagtatgctaagggtggagattgaaacatcgatctctttattacttcactttgctattttttcatcaaatcgcc |
13334421 |
T |
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| Q |
151 |
aagtcaactttatatccccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataac |
235 |
Q |
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| T |
13334420 |
atgtaaagtttatatccccaattaatgtgttatattggtgggagagttggatacctgacatttttatgattcatacatctataac |
13334336 |
T |
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