View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_46 (Length: 250)
Name: NF16975_low_46
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_46 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4487710 - 4487946
Alignment:
| Q |
1 |
taacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaatgcatcagaaaacttgaaggaaatacgatt |
99 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4487710 |
taacttcactttcatgacctgaaaaagatatcatacatttaaaaacaaaaaaattgctatcatattttaatgcatcagaaaatttgaaggaaatacgatt |
4487809 |
T |
|
| Q |
100 |
ttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatacacttagaaaccaacgttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487810 |
ttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatacacttagaaaccaacgttt |
4487909 |
T |
|
| Q |
200 |
gcgtatagtcacaccttcactcagcggggtttaactt |
236 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4487910 |
gcgtatagtcacaccttcactcagcggggtttaactt |
4487946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22067210 - 22067446
Alignment:
| Q |
1 |
taacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaatgcatcagaaaacttgaaggaaatacgatt |
99 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
22067210 |
taacttcactttcatgacctgaaaaagatatcatacatttagaaacagaataattgctatcatattttaatgcatcagaaaatttgaaggaaataagatt |
22067309 |
T |
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| Q |
100 |
ttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatacacttagaaaccaacgttt |
199 |
Q |
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| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22067310 |
tccgatctgaaaaagaaaacatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatacacttagaaaccaacattt |
22067409 |
T |
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| Q |
200 |
gcgtatagtcacaccttcactcagcggggtttaactt |
236 |
Q |
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|||||||||| |||||||||||| |||||||||||| |
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| T |
22067410 |
gcgtatagtctgaccttcactcagtggggtttaactt |
22067446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19023311 - 19023547
Alignment:
| Q |
1 |
taacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaatgcatcagaaaacttgaaggaaatacgatt |
99 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
19023311 |
taacttcactttcataacctgaaaaagatatcatacatttagaaacagaaaaattgctatcatattttaatgcatcagaaaatttgaaggaaataagatt |
19023410 |
T |
|
| Q |
100 |
ttcgatctgagaaagaaaatatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatacacttagaaaccaacgttt |
199 |
Q |
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| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
19023411 |
tccgatctgaaaaagaaaacatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgatttaatatcacacacttagaaaccaacgttt |
19023510 |
T |
|
| Q |
200 |
gcgtatagtcacaccttcactcagcggggtttaactt |
236 |
Q |
| |
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||| |||||| |||||||||||| |||||||||||| |
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| T |
19023511 |
gcgaatagtctgaccttcactcagtggggtttaactt |
19023547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 22621514 - 22621757
Alignment:
| Q |
1 |
taacttcactttcatgacctgaaaaa-atatcatacatttagaaacnnnnnnnttgctatcatattttaatgcatcagaaaacttgaaggaaatacgatt |
99 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||| |||| |
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| T |
22621514 |
taacttcactttcatgacctgaaaaagatatcatacatttagaaatagaaaaatcgctatcatattttaatgcatcaggaaatatgaaggaaataagatt |
22621613 |
T |
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| Q |
100 |
ttcgatctgagaaagaaaa------tatgcctaccaatcagattttatgttcttcatcaaaaatcgctatcatgttttaatatcatacacttagaaacca |
193 |
Q |
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| ||||||| ||| |||| ||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
22621614 |
tcagatctgaaaaaaaaaaaaaaactatgcctgctaatcaaattttatgttcttcatcaaaattcgctatcatgttttaatatcatacatttagaaacca |
22621713 |
T |
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| Q |
194 |
acgtttgcgtatagtcacaccttcactcag-cggggtttaactt |
236 |
Q |
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| || ||||||||||||||||||| ||||| |||||||||||| |
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| T |
22621714 |
aagtctgcgtatagtcacaccttctctcagttggggtttaactt |
22621757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 13286 - 13246
Alignment:
| Q |
115 |
aaaatatgcctaccaatcagattttatgttcttcatcaaaa |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
13286 |
aaaatatgcctaccaatcagattttatgttcttcatcaaaa |
13246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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