View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16975_low_47 (Length: 250)
Name: NF16975_low_47
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_47 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 8518720 - 8518954
Alignment:
| Q |
16 |
agcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8518720 |
agcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacaacatgttcaatactactacttctaac |
8518819 |
T |
|
| Q |
116 |
caaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8518820 |
caaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaaggtccatttgcaatttca |
8518919 |
T |
|
| Q |
216 |
accttaaaacctctaccatcaattgtcttgtaact |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8518920 |
accttaaaacctctaccatcaattgtcttgtaact |
8518954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 8526814 - 8527045
Alignment:
| Q |
16 |
agcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||| || |||||||||||||||| || ||| |
|
|
| T |
8526814 |
agcaatgatcaatccaaatattagaagaagcaaaaacacttataccatcaccatcagaaccttgtcgataaccaacatgttcaatactactcct---aac |
8526910 |
T |
|
| Q |
116 |
caaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttca |
215 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||| |
|
|
| T |
8526911 |
cataccaggattacttggtttacaatcatgaatactaataccatgcacaatcacatgactaacaccctgtattgtaatacatggtccatttccaatttca |
8527010 |
T |
|
| Q |
216 |
accttaaaacctctaccatcaattgtcttgtaact |
250 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||| |
|
|
| T |
8527011 |
actttagcacctctaccatcaattgttttgtaact |
8527045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 55373805 - 55373929
Alignment:
| Q |
126 |
ttacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaac |
225 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| | ||| |||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| | |
|
|
| T |
55373805 |
ttacttggtttacaatcatgaatgctaattccatgtataataacatgactaacaccttgtattgtaatacaaggtccatttccaatctcaactttaactc |
55373904 |
T |
|
| Q |
226 |
ctctaccatcaattgtcttgtaact |
250 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
55373905 |
ctctaccatcaatagtcttgtaact |
55373929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 7593607 - 7593679
Alignment:
| Q |
175 |
taacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaacctctaccatcaattgtcttgta |
247 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||| | ||| || |||||| ||||||||||||||||| |
|
|
| T |
7593607 |
taacataatgtattgtaatacatccaccatttgcaatgtgaacactagcacctcttccatcaattgtcttgta |
7593679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University