View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_49 (Length: 248)
Name: NF16975_low_49
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_49 |
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| [»] chr7 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 60 - 248
Target Start/End: Original strand, 16873514 - 16873701
Alignment:
| Q |
60 |
aacatgaaagatgatcatgattcatgaaatatttatccttattatgttccaattttgcagggaaagaagcgattactgcgaagagagttacaactcttga |
159 |
Q |
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| T |
16873514 |
aacatgaaagatgatcatgattcatgaaatatt-atccttattatgttccaattttgcagggaaagaagtgattactggtaagagagttacagctcttga |
16873612 |
T |
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| Q |
160 |
aagagcacaatctttcaaaacatgtaatccatcctttgttgttgtcatgcgtgcatcatacgttaaacatcattttctactggtaagtt |
248 |
Q |
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| T |
16873613 |
aagagcacaatctttcaaaacaagcaatccgtcctttgttgttgtcatgcgtgcatcatacgttaaacatcattttctactggtaagtt |
16873701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 16863725 - 16863851
Alignment:
| Q |
96 |
ccttattatgttccaattttgcagggaaagaagcgattactgcgaagagagttacaactcttgaaagagcacaatctttcaaaacatgtaatccatcctt |
195 |
Q |
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| T |
16863725 |
ccttattgtgttcaaattttgcagggaaacaagtgcttgctacaaagagagttacagctcttgaaagagcacaatctttcaaaacatgtaacccatcctt |
16863824 |
T |
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| Q |
196 |
tgttgttgtcatgcgtgcatcatacgt |
222 |
Q |
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| T |
16863825 |
tgttgttgtcatgcgcgcatcatacgt |
16863851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 17606182 - 17606295
Alignment:
| Q |
133 |
tactgcgaagagagttacaactcttgaaagagcacaatctttcaaaacatgtaatccatcctttgttgttgtcatgcgtgcatcatacgttaaacatcat |
232 |
Q |
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| T |
17606182 |
tactgctaagaaagttacaactcttgaaagagcacaatctttcaaaatatgtaatccatcctttgttgttgtcatgggtgcatcatacgttgaacgccgt |
17606281 |
T |
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| Q |
233 |
tttctactggtaag |
246 |
Q |
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| T |
17606282 |
tttcttctggtaag |
17606295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 103 - 248
Target Start/End: Original strand, 16868486 - 16868634
Alignment:
| Q |
103 |
atgttccaattttgcagggaaagaagcgattactgc----gaagagagttacaactcttgaaagagcacaatctttcaaaacatgtaatccatcctttgt |
198 |
Q |
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| T |
16868486 |
atgttccaattttgtaggaaaacaagtgattactgctgctgaaaa-agttacaactcttgaaagagcaaaatctttcaaaataagaaatccatcctttgt |
16868584 |
T |
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| Q |
199 |
tgttgtcatgcgtgcatcatacgttaaacatcattttctactggtaagtt |
248 |
Q |
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| T |
16868585 |
tgttgtcatgcgtgcatcatacgttgaacataaatttttaatggtaagtt |
16868634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 45270518 - 45270621
Alignment:
| Q |
145 |
agttacaactcttgaaagagcacaatctttcaaaacatgtaatccatcctttgttgttgtcatgcgtgcatcatacgttaaacatcattttctactggta |
244 |
Q |
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| T |
45270518 |
agttacaacacttgaaagagcaaaatctttcaaaacatgtaatccatcctttgttgttgtcatgggtgcatcatacgttgagcaccattttcttctggta |
45270617 |
T |
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| Q |
245 |
agtt |
248 |
Q |
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|||| |
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| T |
45270618 |
agtt |
45270621 |
T |
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