View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_50 (Length: 245)
Name: NF16975_low_50
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 39664937 - 39665164
Alignment:
| Q |
8 |
gtttcaagtttatgttattttaattcaagacgtcaaggacttgattgagcaaagtaacattatattttgtcacactctcagagagagaaatcaacgtgag |
107 |
Q |
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| T |
39664937 |
gtttcaagtttatgtcgttttaattcaagacgttaaggacttgattgagcaaagtaacattatattttgtcacactctcaaagagagaaatcaatgtgag |
39665036 |
T |
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| Q |
108 |
cgaataatgattttatttatcatatcttccctacggatgatcttttacatcttctaaagatggatgcaactgaaactttcttttct-nnnnnnngtttgt |
206 |
Q |
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| T |
39665037 |
caaataatgattttatttatcatatctcccatacggatgatcttttacatcttctaaagatggatgcaactgaaactttcttttctaaaaaaaagtttgt |
39665136 |
T |
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| Q |
207 |
gtttgttttctcttcggtttatcttttt |
234 |
Q |
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| T |
39665137 |
gtttgttttctcttcggtttatcttttt |
39665164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 45463403 - 45463327
Alignment:
| Q |
25 |
ttttaattcaagacgtcaaggacttgattgagcaaagtaacattatattttgtcacactctcagagagagaaatcaa |
101 |
Q |
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| T |
45463403 |
ttttgattcaagacgtgaaggacttgatagaacaaagtaatattattgtttgtcacactctcagagagaaaaatcaa |
45463327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 29109322 - 29109230
Alignment:
| Q |
9 |
tttcaagtttatgttattttaattcaagacgtcaaggacttgattgagcaaagtaacattatattttgtcacactctcagagagagaaatcaa |
101 |
Q |
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| T |
29109322 |
tttcatgtttatgctgttttgattcaagacgtgaaggactagattgaacaaactaatattattgtttgtcacactctcaaagagagaaatcaa |
29109230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 29076151 - 29076065
Alignment:
| Q |
15 |
gtttatgttattttaattcaagacgtcaaggacttgattgagcaaagtaacattatattttgtcacactctcagagagagaaatcaa |
101 |
Q |
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||||||| | |||| ||||||||||| ||||||| || ||| |||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
29076151 |
gtttatgctgttttgattcaagacgtgaaggactagactgaacaaactaatattattgtttgtcacactctcagagagagaaatcaa |
29076065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 32398832 - 32398771
Alignment:
| Q |
8 |
gtttcaagtttatgttattttaattcaagacgtcaaggacttgattgagcaaagtaacatta |
69 |
Q |
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|||||| ||||||| ||||||||||||| |||| ||||| ||||| | |||| ||||||||| |
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| T |
32398832 |
gtttcatgtttatggtattttaattcaaaacgtgaaggatttgatagggcaaggtaacatta |
32398771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 13473039 - 13473096
Alignment:
| Q |
136 |
ccctacggatgatcttttacatcttctaaagatggatgcaactgaaactttcttttct |
193 |
Q |
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| T |
13473039 |
cccttcggatgatctcttgaatctccttaagatggacgcaactgaaactttcttttct |
13473096 |
T |
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