View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_52 (Length: 244)
Name: NF16975_low_52
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 8519023 - 8519231
Alignment:
| Q |
1 |
tttgaattacaccataacgaagtgtaccttcttttggttttaatggatcatctgaagggttagtgacttcatatatttcaccaaattttcctccagttgc |
100 |
Q |
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| T |
8519023 |
tttgaattacaccataacgaagtgtaccttgtttagggtttatcgggtcatctgaagggttagtgacttcatat-tttcaccaaactttcctccagttgc |
8519121 |
T |
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| Q |
101 |
attactgccaaatccttttgcacaatttgctaatgattggcgatttgaagcccactttgaattggttctccagcatgagtcaattgcgttcatcacaatt |
200 |
Q |
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| T |
8519122 |
attactgccaaatccttttgcacaatctgctaaggattggcgatttgaagcccactttgaattggttctccagcatgagtcaattgtgttcatcacaact |
8519221 |
T |
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| Q |
201 |
tgtttctttg |
210 |
Q |
| |
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||||| |||| |
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| T |
8519222 |
tgtttttttg |
8519231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 8519662 - 8519524
Alignment:
| Q |
72 |
tatatttcaccaaattttcctccagttgcattactgccaaatccttttgcacaatttgctaatgattggcgatttgaagcccactttgaattggttctcc |
171 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8519662 |
tatatttcaccaaactttcctccagttgcattactgccaaatccttttgcacaatctgctaaggattggcgatttgaagcccactttgaattggttctcc |
8519563 |
T |
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| Q |
172 |
agcatgagtcaattgcgttcatcacaatttgtttctttg |
210 |
Q |
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| T |
8519562 |
agcatgagtcaattgtgttcatcacaacttgtttttttg |
8519524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 8527115 - 8527306
Alignment:
| Q |
2 |
ttgaattacaccataacgaagtgtaccttcttttggttttaatggatcatctgaagggttagtgacttcatatatttcaccaaattttcctccagttgca |
101 |
Q |
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||||||||||||||||||||||||||||| |||||| |||| || ||||| ||||||| ||||||||||||||| |||||| ||||||||||| ||||| |
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| T |
8527115 |
ttgaattacaccataacgaagtgtacctttttttgggtttatagggtcatcagaagggtcagtgacttcatatatctcaccatattttcctccaattgca |
8527214 |
T |
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| Q |
102 |
ttactgccaaatccttttgcacaatttgctaatgattggcgatttgaagcccactttgaattggttctccagcatgagtcaattgcgttcat |
193 |
Q |
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| |||||||||| ||||||||| ||||| |||||| ||||||||| |||| |||||||| | |||||||||||||||||||| |||||| |
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| T |
8527215 |
tctttgccaaatccaattgcacaatctgctagtgattgacgatttgaaacccaatttgaatttgatctccagcatgagtcaattgtgttcat |
8527306 |
T |
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