View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_55 (Length: 242)
Name: NF16975_low_55
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_55 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6971520 - 6971279
Alignment:
| Q |
1 |
ctctctccctctctatggggccatatttataagcactaatataaaaaacatcattctaatataaagtttaggtgagttggattttcagggctcgtcaaaa |
100 |
Q |
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| T |
6971520 |
ctctctccctctctatggggccatatttataagcactaatataaaaaatatcattctaatataaagtttaggtgagttggattttcaggactcatcaaaa |
6971421 |
T |
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| Q |
101 |
ttagagctgacctcaagatttaaagactgtttatagagatttttactgatcacccaccaaatattaatatataattgtatctatagggcgttagtaaata |
200 |
Q |
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| T |
6971420 |
tcagagctgacctcaagatttaaagactgtttatagaggtttttactaatcacccaccaaatattaatatataattgtatctatagggcgttagtaaata |
6971321 |
T |
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| Q |
201 |
aatttatcctccacacaactctctctacaagtctcccttgat |
242 |
Q |
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| T |
6971320 |
aatttatcctccacacaactctctctacaagtctcccttgat |
6971279 |
T |
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