View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_6 (Length: 524)
Name: NF16975_low_6
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 6971535 - 6972041
Alignment:
| Q |
1 |
ttaaataatgatttcaaattatattattattaatgggattttgcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagagg |
100 |
Q |
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| T |
6971535 |
ttaaataatgatttcaaattatattattattaatgggattttgcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagagg |
6971634 |
T |
|
| Q |
101 |
ctgcattgatcaaggagtttctttcaaagtatagtacagtatctgggaaatcattgcagcaacaacaaggttccaagcattttattggaaaaggcttgtt |
200 |
Q |
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| T |
6971635 |
ctgcattgatcaaggagtttctttcaaagtatagtacagtatctgggaaatcattgcaacaacaacaaggttccaagcattttattggaaaaggcttgtt |
6971734 |
T |
|
| Q |
201 |
aatggcaaatggtgaagattggaatcaccaacgtcaccttgtttcccctgcattcatgggagaaaaacttaaggtattgaaaaatcgaggaaaatgtatt |
300 |
Q |
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| T |
6971735 |
aatggcaaatggtgaagattggaatcaccaacgtcacattgtttcccctgcattcatgggagaaaaacttaaggtattgaaaaatcgaggaaaacgtatt |
6971834 |
T |
|
| Q |
301 |
cggtgcaattaggatatccctgcactcacacagtcatgtattgccgattgttagatttacatcaaacatttcaaaaatacgtagattttattttattttc |
400 |
Q |
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| T |
6971835 |
cggtgcaattggggtatccctacactcacacagtcatgtattgccgattgttagatttacatcaaacatttcaaaaatacgtagattttattttattttc |
6971934 |
T |
|
| Q |
401 |
gaaaatttaatataccaagtttaaaattataattgttcaatattgatccaacattcattgatacagggtgactgtgtgaattcaggatatcccaaccgca |
500 |
Q |
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| T |
6971935 |
gaaaatttgatataccaagtttaaaattaaaattgttacatattgatctaacattcattgatacagggtgactgtgtgaattcaggatatcccaaccaca |
6972034 |
T |
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| Q |
501 |
aggaatc |
507 |
Q |
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| T |
6972035 |
aggaatc |
6972041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 45 - 260
Target Start/End: Original strand, 1266471 - 1266686
Alignment:
| Q |
45 |
aggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtacagtatct |
144 |
Q |
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| T |
1266471 |
aggaaagaggtatatatattggaatggtccagagccaaggttgtgtttgacagaaactgaattgataaaagagtttctttcaaaatacagtacagtatct |
1266570 |
T |
|
| Q |
145 |
gggaaatcattgcagcaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatggtgaagattggaatcaccaacgtcaccttgttt |
244 |
Q |
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| T |
1266571 |
gggaaatcatggttacaaaaacagggttcaaaacatttcattggagaaggagtattgatggcaaatggtgaaaattggtatcaccaacgtcacattgttg |
1266670 |
T |
|
| Q |
245 |
cccctgcattcatggg |
260 |
Q |
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|||||||||||||||| |
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| T |
1266671 |
cccctgcattcatggg |
1266686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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