View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16975_low_64 (Length: 232)
Name: NF16975_low_64
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_64 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 19894214 - 19893984
Alignment:
| Q |
1 |
tggtccccctctatattaatgatttaataaaataaaagagaaaacacatcagaagatggtgttatcgtgctggcaagaattagatgcagaatnnnnnnnt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19894214 |
tggtccccctctatattaatgatttaataaaataaaagagaaaacacatcagaagatggtgttatcgtgctggcaagaattagatgcagaataaaaaaat |
19894115 |
T |
|
| Q |
101 |
gcacgtaaggataaattgtcaaaaagtacatgaatgtggcttgaaaaatgactcatcacannnnnnnnnctttcacattttaatcatatatggtatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19894114 |
gcacgtaaggataaattgtcaaaaagtacatgaatgtgccttgaaaaatgactcatcaca-ttttttttcattcacattttaatcatatatggtatgttt |
19894016 |
T |
|
| Q |
201 |
tgtcaaaaaatataaaatcatatatggtatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19894015 |
tgtcaaaaaatataaaatcatatatggtatgt |
19893984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University