View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_66 (Length: 228)
Name: NF16975_low_66
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21559772 - 21559993
Alignment:
| Q |
1 |
tatttatgtgataatcaacaaacttgggattatcaaaacaagtatttacgtggtaatcaacaaatcaattaagggcccttnnnnnnntcaattaagtgaa |
100 |
Q |
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| T |
21559772 |
tatttatgtgataatcaacaaacttgggattttcaaaacaagtatttacgtggtaatcaacaaatcaattaagggcccttaaaaaaatcaattaagtgaa |
21559871 |
T |
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| Q |
101 |
tgtgactttaaaacacttttttaggatctcgtcatgtaaatgtttgtaaaactccatgttgttctcaccctgtatagattttgattatttatgtcatgaa |
200 |
Q |
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| T |
21559872 |
tgtgactttaaaacacttttttaggatctcgtcatgtaaacgtttgtaaaactccatgttgttctcaccctgtatagattttaattatttatgtcatgaa |
21559971 |
T |
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| Q |
201 |
ccaaaactatgatattcttcga |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
21559972 |
ccaaaactatgatagtcttcga |
21559993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21559730 - 21559793
Alignment:
| Q |
1 |
tatttatgtgataatcaacaaacttgggattatcaaaacaagtatttacgtggtaatcaacaaa |
64 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
21559730 |
tatttatgtgctaatcaacaaacttgggattatcaaaacaagtatttatgtgataatcaacaaa |
21559793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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