View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_70 (Length: 223)
Name: NF16975_low_70
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_70 |
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| [»] scaffold0131 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 4487176 - 4486993
Alignment:
| Q |
34 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
132 |
Q |
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| T |
4487176 |
tgttgtgttggaggttttgcgggtttttgtgggtctgctggctgcatttttacttgatgtgaagtgcagttttttctttgttgcgtgggggctgtcatag |
4487077 |
T |
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| Q |
133 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
216 |
Q |
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| T |
4487076 |
gtccagcaggttgttgggtgatcaataggcgtaattacaatggctgtattttgctttattttttgggtctttgctagttctgtg |
4486993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4487235 - 4487193
Alignment:
| Q |
1 |
ggaacacaaactataggactgtgataggtgttgtgttgtgttg |
43 |
Q |
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| T |
4487235 |
ggaacacaaactataggactgtgataggtgttgtgttgtgttg |
4487193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 216
Target Start/End: Complemental strand, 10316831 - 10316650
Alignment:
| Q |
36 |
ttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcataggt |
134 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
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| T |
10316831 |
ttgtgttggaggttttgcgggtttttgtgggtctgtaggctgtgtttttacttgatgtgcaatgcagttttttctttgttgcgtgagggctgtcataggt |
10316732 |
T |
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| Q |
135 |
ccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
216 |
Q |
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| T |
10316731 |
ccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagtttgatttattttttgggtctatgctacttctgtg |
10316650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 19022601 - 19022423
Alignment:
| Q |
34 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
132 |
Q |
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| T |
19022601 |
tgttgtgttggaggttttgcgggtttttgtcggtctgcaggctgcgtttttacttgatgtgcagtgcaattttttctttgttgtgtgggggttgt----- |
19022507 |
T |
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| Q |
133 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
216 |
Q |
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|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
19022506 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtctgtgctacttctgtg |
19022423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 22066483 - 22066319
Alignment:
| Q |
34 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
132 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
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| T |
22066483 |
tgttgtgttggagattttgcgggtttttgtgggtctgcaggctgcgtttttacaatatgtgcagtgcagttttttctttgttgcgtgggggctgt----- |
22066389 |
T |
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| Q |
133 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtct |
202 |
Q |
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| T |
22066388 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtct |
22066319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19022665 - 19022623
Alignment:
| Q |
1 |
ggaacacaaactataggactgtgataggtgttgtgttgtgttg |
43 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19022665 |
ggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
19022623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22066542 - 22066500
Alignment:
| Q |
1 |
ggaacacaaactataggactgtgataggtgttgtgttgtgttg |
43 |
Q |
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| T |
22066542 |
ggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
22066500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 13616 - 13759
Alignment:
| Q |
34 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
132 |
Q |
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||||||||| ||||||| ||||||||||||||||||| | ||||||||||| ||||||| | || || ||||||||| |||||||||||||||||||||| |
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| T |
13616 |
tgttgtgtttgaggtttcgcgggtttttgtgggtctgctagctgcgtttttccttgatgtgcagcgcggttttttctatgttgcgtgggggctgtcatag |
13715 |
T |
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| Q |
133 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggc |
176 |
Q |
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|||||||||||||| | ||||||||||||| |||||| ||||| |
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| T |
13716 |
gtccagcaggttgtggagtgatcaataggcataattacggtggc |
13759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13562 - 13604
Alignment:
| Q |
1 |
ggaacacaaactataggactgtgataggtgttgtgttgtgttg |
43 |
Q |
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||||||||||||| ||||||| | ||||||||||||||||||| |
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| T |
13562 |
ggaacacaaactagaggactgcgttaggtgttgtgttgtgttg |
13604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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