View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_74 (Length: 214)
Name: NF16975_low_74
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_74 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 40006058 - 40006255
Alignment:
| Q |
18 |
tatcggacaggacacatgtccgataccgagacacgcctaatccgtgcttcatagcaaaaag-tgttgtctacaaggaaggataagacaacgcttatgtta |
116 |
Q |
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| T |
40006058 |
tatcgaacacgacacatgtccgataccgagacacgcctaatccgtgtttcatagcaaaaaaatgttgtctataaggaaggataaaacgacgcttatgtta |
40006157 |
T |
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| Q |
117 |
tgatgaaagtgtgtcgaatgtttatctataacaatgcttttcaaaggaagagttgttgaaaaggggtccataacactgtttttcactttaaaaagtga |
214 |
Q |
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| T |
40006158 |
tgatgaaagtgtgtcgaatgtttatctataacaatgcttttcaaaggaagagttgttgaaaaggggtccataacactgtttttcactttaaaaagtga |
40006255 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 8234203 - 8234243
Alignment:
| Q |
20 |
tcggacaggacacatgtccgataccgagacacgcctaatcc |
60 |
Q |
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| T |
8234203 |
tcggacacgacacatgtccgacaccgagacacgcctaatcc |
8234243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 14747630 - 14747665
Alignment:
| Q |
36 |
tccgataccgagacacgcctaatccgtgcttcatag |
71 |
Q |
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| T |
14747630 |
tccgacaccgagacacgcctaatccgtgcttcatag |
14747665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 40993337 - 40993296
Alignment:
| Q |
20 |
tcggacaggacacatgtccgataccgagacacgcctaatccg |
61 |
Q |
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| T |
40993337 |
tcggacacgacacatgtccgacaccgggacacgcctaatccg |
40993296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 55401132 - 55401173
Alignment:
| Q |
20 |
tcggacaggacacatgtccgataccgagacacgcctaatccg |
61 |
Q |
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| T |
55401132 |
tcggacacgacacgtgtccgacaccgagacacgcctaatccg |
55401173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 6525676 - 6525644
Alignment:
| Q |
29 |
acacatgtccgataccgagacacgcctaatccg |
61 |
Q |
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| T |
6525676 |
acacatgtccgataccgagacacacctaatccg |
6525644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 3840 - 3799
Alignment:
| Q |
20 |
tcggacaggacacatgtccgataccgagacacgcctaatccg |
61 |
Q |
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| T |
3840 |
tcggacacgacacatgtccgacatcgagacacgcctaatccg |
3799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 2438721 - 2438680
Alignment:
| Q |
20 |
tcggacaggacacatgtccgataccgagacacgcctaatccg |
61 |
Q |
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| T |
2438721 |
tcggacacgacacatgtccgacaccgggacacgcctaatccg |
2438680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 22515889 - 22515848
Alignment:
| Q |
20 |
tcggacaggacacatgtccgataccgagacacgcctaatccg |
61 |
Q |
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| T |
22515889 |
tcggacacgacacatatccgacaccgagacacgcctaatccg |
22515848 |
T |
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