View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_8 (Length: 510)
Name: NF16975_low_8
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_8 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: scaffold0318 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 10917 - 11395
Alignment:
| Q |
13 |
aaaattatcaacaggtataccattagatctcaactgggtttgcaatgttttattatcaacgatgattgcacaaaccttaaattattgaatttgctatgga |
112 |
Q |
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| T |
10917 |
aaaattatcaacaggtataccattagatctcaactgggtttgcaatgttttattctcaacgatgattgcataaatctcaaattattgaatttgctatgga |
11016 |
T |
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| Q |
113 |
ccttcagtctctaa----taatgaa-gatttaagaattatttagtcaagtgaattgatgaaggattcatgcagtatatatggaccaatgaagactaactt |
207 |
Q |
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| T |
11017 |
ccttcagcctctaactaataatgaaagattta-gaatcagt-agtcaaaggaattgatgaagaattcatgcagtatatatggaccaatgaagactaactt |
11114 |
T |
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| Q |
208 |
ttacatatgctatatataatggtcactatactcgagcattttacagcttattttcatcatgtacactctcaaattgattattctttttattaaatctcaa |
307 |
Q |
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| T |
11115 |
ttacatatattatatata-tggccactatacttgagcattttacagcttattgtcatca----cactctcaaattcattatccttttaattaaatctcaa |
11209 |
T |
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| Q |
308 |
ttgaattcataatttttggagcaggtaatcttgcaaacaaaacgaacaaatcaataggaacaaaataattgctttataaacta-----tgaaaagggtgg |
402 |
Q |
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| T |
11210 |
tcgaattcataatttttggag---gtaat-taccaaacaaaacgaacaaatcaataggaacaaaataattgctttataaactactacatgaaaaaggtgg |
11305 |
T |
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| Q |
403 |
acaaaaaatgatatggcccctcaaacccaataaaatataacagtacttttctgtgtggagccaaatttaatgcttctgaccccagtatgt |
492 |
Q |
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| T |
11306 |
acaaaaaatgatatggcccctcaaacccaatgaaatataacagtacttttctgtgtggagccaaatttaatgcttctgaccccagtatgt |
11395 |
T |
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