View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16976_high_13 (Length: 415)

Name: NF16976_high_13
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16976_high_13
NF16976_high_13
[»] chr4 (6 HSPs)
chr4 (16-399)||(51197647-51198027)
chr4 (146-267)||(51155262-51155383)
chr4 (146-277)||(51144118-51144248)
chr4 (296-393)||(29938577-29938674)
chr4 (311-399)||(51144284-51144372)
chr4 (311-399)||(51155424-51155512)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 51197647 - 51198027
Alignment:
Q  16 catgttatatgttagtagaattggtgaagcttgttggtaaatatacccttcaaggaacaacgtgaatattagtttgaacttgaagtgtacatttttaaca 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51197647 catgttatatattagtagaattggtgaagcttgttggtaaatatacccttcaaggaacaacgtgaatattagtttgaacttgaagtgtacatttttaaca 51197746  T
Q  116 tcaaaattgttagacttaataacaacttgttgtgttcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcatctcttttacgtaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51197747 tcaaaattgttagacttaataacaacttgttgtgttcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcgtctcttttacgtaagt 51197846  T
Q  216 acattagttcatctattagttcttacaatctaatgtattagtttggttcattacgatctaaaagaagccannnnnnnnnatatgtattagagttgacttg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||         |||||||| ||||||||||||    
T  51197847 acattagttcatctattagttcttacaatctaatgtattagtttggttcattacaatctaaaagaagcca---ttttttatatgtatcagagttgacttg 51197943  T
Q  316 ctggatgattactggtgagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctt 399  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51197944 ctggatgattaccggtgagagacaggctgcaagaatcagaagcttatacctccaaacaattttgaggcaagatgtgagtttctt 51198027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 51155262 - 51155383
Alignment:
Q  146 tgtgttcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcatctcttttacgtaagtacattagttcatctattagttcttacaatc 245  Q
    |||| |||||||||  ||||||| ||||||||||||||||||||||| ||||| ||  |||| ||||||||||||||||  ||  ||||||||| |||||    
T  51155262 tgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtacattagtttctcagttagttcttccaatc 51155361  T
Q  246 taatgtattagtttggttcatt 267  Q
    |||| |||| ||||||| ||||    
T  51155362 taatttattggtttggtacatt 51155383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 51144118 - 51144248
Alignment:
Q  146 tgtgttcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcatctcttttacgtaagtacattagttcatctattagttcttacaatc 245  Q
    |||| |||||||||  ||||||| ||||||||||||||||||||||| ||||| ||  |||| ||||||| ||||||||  ||  |||||||||||||||    
T  51144118 tgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtgcattagtttctcagttagttcttacaatc 51144217  T
Q  246 taatgtattagtttggttcattacgatctaaa 277  Q
    |||| |||| ||||||| ||||| || |||||    
T  51144218 taat-tattggtttggtacattatgaactaaa 51144248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 29938674 - 29938577
Alignment:
Q  296 tatgtattagagttgacttgctggatgattactggtgagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgag 393  Q
    |||||| ||||| | |||||||||||||| ||||| |||||||||  ||||||||| ||| ||||||||||  |||| ||||||||||||||||||||    
T  29938674 tatgtactagaggtaacttgctggatgatcactggggagagacagagtgcaagaattagaggcttataccttaaaacaattttgaggcaagatgtgag 29938577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 51144284 - 51144372
Alignment:
Q  311 acttgctggatgattactggtgagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctt 399  Q
    |||||||||||||| || || |||||||||  ||||||||| ||| | ||||| ||  |||| ||||||||||||||||||||||||||    
T  51144284 acttgctggatgatcaccggggagagacagagtgcaagaattagagggttatatcttaaaacaattttgaggcaagatgtgagtttctt 51144372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 51155424 - 51155512
Alignment:
Q  311 acttgctggatgattactggtgagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctt 399  Q
    ||||| |||||||| || || |||||||||  ||||||||| ||| | ||||||||  |||| |||||||||||||||||||| |||||    
T  51155424 acttgttggatgatcaccggggagagacagagtgcaagaattagagggttataccttaaaacaattttgaggcaagatgtgagcttctt 51155512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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