View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_high_14 (Length: 410)
Name: NF16976_high_14
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 4803169 - 4803553
Alignment:
| Q |
20 |
ttatatacacttcataggggttagcataatgattgtttactataaaaatatgcctgtgattgatttaaagatgaagtgaggtgctagatgttggtgctta |
119 |
Q |
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| T |
4803169 |
ttatatacacttcataggggttagcataatgattgtttactataaaaatatgcttgtgattgatttaaagatgaagtgaggtgctagatgttggtgctta |
4803268 |
T |
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| Q |
120 |
gtcttcaggcatggcattcattcactatgtgtcttatatttgtcccaagactgatctgtgattagttttcgcggtgtgacctcgtttacttgaaaaatca |
219 |
Q |
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| T |
4803269 |
gtcttcaggcatggcattcattcactatgtgtcttatatttgtcccaagactgatctgtgattggttttcgtggtgtgaccttgtttacttgaaaaacca |
4803368 |
T |
|
| Q |
220 |
tcattgtgtctaggggaagtgacaaactgtgttgagtttcaaga-nnnnnnngcaccggttcacattagtattgactcttattaatcatacatgaaaata |
318 |
Q |
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| T |
4803369 |
tcattgtgtctaggggaagtgacaaactgtgttgagtttcaagattttttttgcaccggttcacattagtattgactcttattaatcatacatgaaaata |
4803468 |
T |
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| Q |
319 |
attgcaggaagcctccactgctgcagaggctgagttacctcccacacatcccgtcagactgggtttggctttgaacttctctgtg |
403 |
Q |
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| T |
4803469 |
attacaggaagcctccactgctgcagaggctgagttacctcccacacatcccgtcagactgggtttggctttgaacttctctgtg |
4803553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 11578881 - 11578930
Alignment:
| Q |
74 |
tgtgattgatttaaagatgaagtgaggtgctagatgttggtgcttagtct |
123 |
Q |
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| T |
11578881 |
tgtgattgatttaaagatgaagtgaggtactagatgttagtccttagtct |
11578930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 21167652 - 21167701
Alignment:
| Q |
74 |
tgtgattgatttaaagatgaagtgaggtgctagatgttggtgcttagtct |
123 |
Q |
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| T |
21167652 |
tgtgattaatttaaagatgaagtgaggtgctagacattagtgcttagtct |
21167701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 31714710 - 31714759
Alignment:
| Q |
74 |
tgtgattgatttaaagatgaagtgaggtgctagatgttggtgcttagtct |
123 |
Q |
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| T |
31714710 |
tgtgattgatttaaagatgaagtgaggtactagacgttagtccttagtct |
31714759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 2595173 - 2595124
Alignment:
| Q |
74 |
tgtgattgatttaaagatgaagtgaggtgctagatgttggtgcttagtct |
123 |
Q |
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| T |
2595173 |
tgtgattgatttaaagatgaagtgaggtactagacgttagtccttagtct |
2595124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 402
Target Start/End: Original strand, 35776101 - 35776171
Alignment:
| Q |
332 |
tccactgctgcagaggctgagttacctcccacacatcccgtcagactgggtttggctttgaacttctctgt |
402 |
Q |
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|||||||| ||||| | |||||||||||||| |||||| | || |||| |||||||||||||||||||| |
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| T |
35776101 |
tccactgcagcagaaggggagttacctcccacgcatcccattcgattgggcttggctttgaacttctctgt |
35776171 |
T |
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