View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_high_2 (Length: 634)
Name: NF16976_high_2
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 153 - 618
Target Start/End: Original strand, 9765241 - 9765706
Alignment:
| Q |
153 |
caaacttaggacgtagtaaagttggaataattgtgtcatcccactctaaattgtcccaccaattcttgtatacgtggattttagtcaagttgttcttgga |
252 |
Q |
| |
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|||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| | || | |||||| |||||||||||||||||| |
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| T |
9765241 |
caaaattaggacgtagtaagcttggaatgattgtgtcatcccactctaaattgtcccaccacttcgttgatccttggattacagtcaagttgttcttgga |
9765340 |
T |
|
| Q |
253 |
agcaaagctggaactgaaaggaagcttctttagattggggcactcaaacactttaatacgttttagggaaggaaaatccaaagctctcttgtggatgctc |
352 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9765341 |
agtaaagctggaattgaaaggaagcttctttagattggggcactcaaataccctaatacgttttagggaaggaaaatccaaagctctcttgtggatgctc |
9765440 |
T |
|
| Q |
353 |
actagcttagacatattacgaaggaagagatatttaagatttctgaatataatatcattgttggagtcatagtcagcttgctcgtcatcgttagcttctt |
452 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
9765441 |
actagcttagacatattagaaaggcgaagaactttaagatttctgaatataatatcattgttggagtcatagtcagcttgctcgtcatctttaacttctt |
9765540 |
T |
|
| Q |
453 |
tcaccacctcttcaattgaaccacaagcaaaaacatcaaggatctcaagaagcggagcatacctcaaccatgtcaaatgagttattgaatgacaataaga |
552 |
Q |
| |
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||||||| ||||||||||||| ||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |
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| T |
9765541 |
tcaccacttcttcaattgaactacaagaagaaacaacaagcttctcaagaagcggagcatacctcaaccatgtcaaatgagttattgaataacaatgata |
9765640 |
T |
|
| Q |
553 |
tagttgcacttggcgaagcttgccaagatggcatttgtcaccaatcgaggaaccatccacgaggct |
618 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||||||| ||||| | ||| |||||| |||||| |
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| T |
9765641 |
tatgtgcacttggcgaagcttgcccagatggcatttgtcagcaatcaatgaagcatccatgaggct |
9765706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 9758043 - 9758103
Alignment:
| Q |
85 |
caattgtaattatactctatgtgagtaatgaaattcagatttttcaacatcttcaattcag |
145 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
9758043 |
caattgtaatcatactctatgtgagtaatgaaattcagatttttcaacttcttcaaatcag |
9758103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 9757960 - 9757995
Alignment:
| Q |
16 |
aattgcataatcagaaaggcttataaaatcaataaa |
51 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9757960 |
aattgcataatcagaaaggcttataaaatcaataaa |
9757995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 158 - 616
Target Start/End: Original strand, 36230745 - 36231203
Alignment:
| Q |
158 |
ttaggacgtagtaaagttggaataattgtgtcatcccactctaaattgtcccaccaattcttgtatacgtggattttagtcaagttgttcttggaagcaa |
257 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | | | |||||| | ||||||| ||||| |||||| |
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|
| T |
36230745 |
ttaggacgtagcaaggttggaataattgtgtcatcccactctaaattgtcccaccactctgtctcaccttggattgcaatcaagttaatcttgaaagcaa |
36230844 |
T |
|
| Q |
258 |
agctggaactgaaaggaagcttctttagattggggcactcaaacactttaatacgttttagggaaggaaaatccaaagctctcttgtggatgctcactag |
357 |
Q |
| |
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| |||||| |||||||||||||| | ||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36230845 |
acctggaattgaaaggaagcttcctcagattggggcaatcagttaccttaatacgttttagggaaggaaaatccaaagctctcttgtggatgctcactag |
36230944 |
T |
|
| Q |
358 |
cttagacatattacgaaggaagagatatttaagatttctgaatataatatcattgttggagtcatagtcagcttgctcgtcatcgttagcttctttcacc |
457 |
Q |
| |
|
|| | |||| | |||| | |||| | |||||||| ||||| |||||||| ||||||||| | ||||||| |||| ||| ||| ||||||||||| |
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|
| T |
36230945 |
ttttggcataccataaaggcaaagatctgtaagatttgcaaatatcatatcatttttggagtcagatccagcttgttcgttatctttaccttctttcacc |
36231044 |
T |
|
| Q |
458 |
acctcttcaattgaaccacaagcaaaaacatcaaggatctcaagaagcggagcatacctcaaccatgtcaaatgagttattgaatgacaataagatagtt |
557 |
Q |
| |
|
||||||||||||||| ||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | || | |
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|
| T |
36231045 |
acctcttcaattgaatcacaaagaccaacaacaaggatctcaagaagcggagcatacatcaaccatgtcaaatgatttattgaatgacaactacttatgt |
36231144 |
T |
|
| Q |
558 |
gcacttggcgaagcttgccaagatggcatttgtcaccaatcgaggaaccatccacgagg |
616 |
Q |
| |
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||||| ||||||| || ||||||| |||||||||| ||||||| |||||||||| |||| |
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|
| T |
36231145 |
gcactcggcgaagatttccaagatcgcatttgtcagcaatcgatgaaccatccatgagg |
36231203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 158 - 628
Target Start/End: Original strand, 36205454 - 36205906
Alignment:
| Q |
158 |
ttaggacgtagtaaagttggaataattgtgtcatcccactctaaattgtcccaccaattcttgtatacgtggattttagtcaagttgttcttggaagcaa |
257 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | | | | | | | |||| | ||||||| ||||| |||||| |
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|
| T |
36205454 |
ttaggacgtagtaaggttggaataattgtgtcatcccactctaatttgtcccaccactccgtctctcctttgattgcaatcaagttattctttaaagcaa |
36205553 |
T |
|
| Q |
258 |
agctggaactgaaaggaagcttctttagattggggcactcaaacactttaatacgttttagggaaggaaaatccaaagctctcttgtggatgctcactag |
357 |
Q |
| |
|
|||||||| | |||||||||||| | ||||||||||| | | || | || |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36205554 |
agctggaattcaaaggaagcttcctcagattggggcatttagctacctcaaaacgttttaaggaaggaaaatccaaagctctcttgtggatgctcactag |
36205653 |
T |
|
| Q |
358 |
cttagacatattacgaaggaagagatatttaagatttctgaatataatatcattgttggagtcatagtcagcttgctcgtcatcgttagcttctttcacc |
457 |
Q |
| |
|
|| | ||||| | |||| ||| |||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |
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|
| T |
36205654 |
ttttggcatataaaaaaggccaagaattttaagatttgtgaatatattatca------------------gcttgctcgtcatctttagcttctttcaca |
36205735 |
T |
|
| Q |
458 |
acctcttcaattgaaccacaagcaaaaacatcaaggatctcaagaagcggagcatacctcaaccatgtcaaatgagttattgaatgacaataagatagtt |
557 |
Q |
| |
|
|||||||| |||||| ||||| || | ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| || || |
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|
| T |
36205736 |
acctcttcgattgaatcacaaacagacacaacaaggacctcgagaagcggagcatacctcaaccatgtcaaatgagttattgaaccacaaaaatttatgc |
36205835 |
T |
|
| Q |
558 |
gcacttggcgaagcttgccaagatggcatttgtcaccaatcgaggaaccatccacgaggctgcctatgctt |
628 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||| || ||||| |
|
|
| T |
36205836 |
acacttggcgaagcatgccaagatggcatttgtcagtaatcgaggaaccatccacaaggctgtctgtgctt |
36205906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 6e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 153 - 611
Target Start/End: Complemental strand, 25475609 - 25475148
Alignment:
| Q |
153 |
caaacttaggacgtagtaaagttggaataattgtgtcatcccactctaaattgtcccaccaattcttgtatacgtggattttagtcaag-ttgttcttgg |
251 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || | | | || || || | || || ||||||| |
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|
| T |
25475609 |
caaacttaggacgtagtaaggttggaataatattgtcatcccactctaaattgtcccaccacttggtccctccttgaatca-agaccagattattcttgg |
25475511 |
T |
|
| Q |
252 |
aagcaaagctggaactgaaaggaagcttctttagattggggcactcaaac---actttaatacgttttagggaaggaaaatccaaagctctcttgtggat |
348 |
Q |
| |
|
||||||||| |||| | |||||||||||| | ||||||||||| | | || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25475510 |
aagcaaagccggaattcaaaggaagcttcctcagattggggcagtgacctttaaccataatacgttttagggaaggaaaattcaaagctctcttgtggat |
25475411 |
T |
|
| Q |
349 |
gctcactagcttagacatattacgaaggaagagatatttaagatttctgaatataatatcattgttggagtcatagtcagcttgctcgtcatcgttagct |
448 |
Q |
| |
|
||||||||| || ||||||| ||||| | |||| |||||||||| ||||||| || |||||||||||||||||| ||||||| || |||| |||||| |
|
|
| T |
25475410 |
gctcactagatttcgcatattatgaaggcaaagatctttaagatttttgaatatcatgtcattgttggagtcatagccagcttgttcaccatctttagct |
25475311 |
T |
|
| Q |
449 |
tctttcaccacctcttcaattgaaccacaagcaaaaacatcaaggatctcaagaagcggagcatacctcaaccatgtcaaatgagttattgaatgacaat |
548 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
25475310 |
tctttcaccacctcttcaattgaataacaatcagaaacagaaaggacctcgagaagcggagcatacctcaaccatgtcaaatgagttattgaacaacaat |
25475211 |
T |
|
| Q |
549 |
aagatagttgcacttggcgaagcttgccaagatggcatttgtcaccaatcgaggaaccatcca |
611 |
Q |
| |
|
|| || ||||||||||||||||| |||| || |||||||| ||||||| |||||||||| |
|
|
| T |
25475210 |
aatgtatgcacacttggcgaagcttgctaagaaggtatttgtcagcaatcgatgaaccatcca |
25475148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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