View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_high_24 (Length: 326)
Name: NF16976_high_24
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 4803107 - 4802804
Alignment:
| Q |
9 |
agcaaaggctattttaatcaatcttttcccaataaaaacaccttttataagttctagtcaataattatcgcttaaacctataacaagattagatggaata |
108 |
Q |
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| T |
4803107 |
agcaaaagttattttaatcaatcttttcccaataaaaacagcttttataagttctagtcaataattatcacttaaacctataacaagattagatggaata |
4803008 |
T |
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| Q |
109 |
t-ataaatgttnnnnnnnnnnnnn-tcattactgatccccaaaagcttcttatatggcaagtcctgtggaatgctttaacgaagaaacaaatgcatatat |
206 |
Q |
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| T |
4803007 |
ttataaatgtaaaaaaaaaaaaaaatcattattgatccccaaaagcttcttatatggcaagtcccgcggaatgctttaactaagaaacaaatgcatatat |
4802908 |
T |
|
| Q |
207 |
agttatatactaagatcagaaaggacatgaatgtaaagtaacccaaaccaagcatgattaagctctcaaagacaatcgtgaatcagtaatgaaatacaca |
306 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4802907 |
agttatatactaagatcagaaaggatatgaatgtaaagtaacccaaaccaagcatgattaagctctcaaagacaattgtgaatcagtaatgaaatacaca |
4802808 |
T |
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| Q |
307 |
gaac |
310 |
Q |
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|||| |
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| T |
4802807 |
gaac |
4802804 |
T |
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