View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_high_25 (Length: 318)
Name: NF16976_high_25
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 82 - 299
Target Start/End: Complemental strand, 7908216 - 7907999
Alignment:
| Q |
82 |
gatgcaactcgaaaggctttaatcgtttaatggcattacaaactagatacatgatttcagttaccgatatgcgaatgtgcttctccaataaataacgatc |
181 |
Q |
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| T |
7908216 |
gatgcaactcgaaaggctttaatcgttttacggcattacaaactagatacatgatttcagttaccgatatccgaatgtgcttctccaaaaaataacgatc |
7908117 |
T |
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| Q |
182 |
aaaaacaagtgatttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaactctagaaaggatttcgataatcagatcctccgggagt |
281 |
Q |
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| T |
7908116 |
aagaacaagtgatttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaaatctagaaaggatttcgataatcagatcctccgggagt |
7908017 |
T |
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| Q |
282 |
atcgtgttctgtgactcc |
299 |
Q |
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|||||||||||||||||| |
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| T |
7908016 |
atcgtgttctgtgactcc |
7907999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 299
Target Start/End: Original strand, 7348696 - 7348816
Alignment:
| Q |
179 |
atcaaaaacaagtgatttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaactctagaaaggatttcgataatcagatcctccggg |
278 |
Q |
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||||||||| |||||||||||| ||||||| || ||||| |||| | || || ||||| ||||||||||||||||||||||| |||| ||||||||| |
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| T |
7348696 |
atcaaaaactagtgatttccacaacttgcaaacacaccttaattcctgaggattgcttgactcaactctagaaaggatttcgatcatcaactcctccggg |
7348795 |
T |
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| Q |
279 |
agtatcgtgttctgtgactcc |
299 |
Q |
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|| || |||||| |||||||| |
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| T |
7348796 |
agaattgtgttcggtgactcc |
7348816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 7365832 - 7365945
Alignment:
| Q |
186 |
acaagtgatttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaactctagaaaggatttcgataatcagatcctccgggagtatcg |
285 |
Q |
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| T |
7365832 |
acaagagatttccaccacttgcatactgacctcaactgcagaggattgtttgagtcaactctagcaaggatttcgatcatcagttccaccgggagaatcg |
7365931 |
T |
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| Q |
286 |
tgttctgtgactcc |
299 |
Q |
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|| || |||||||| |
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| T |
7365932 |
tggtcggtgactcc |
7365945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 7323262 - 7323351
Alignment:
| Q |
178 |
gatcaaaaacaagtgatttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaactctagaaaggatttcgataatca |
267 |
Q |
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| T |
7323262 |
gatcaagaactagcgaattccacaagttgcaaacgcacctcaattgcagagtattgcttgaatcaactctagaaaggatttcgatcatca |
7323351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 7332778 - 7332827
Alignment:
| Q |
178 |
gatcaaaaacaagtgatttccaccacttgcatacgcacctcaattgcaga |
227 |
Q |
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| T |
7332778 |
gatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcaga |
7332827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 7342220 - 7342315
Alignment:
| Q |
192 |
gatttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaactctagaaaggatttcgataatcagatcctccgggagtatcgtg |
287 |
Q |
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||||||||| ||||| | |||||||||| ||||||| | |||||| ||||| |||||||||||||| || |||| ||||| ||||| |||||| |
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| T |
7342220 |
gatttccacaacttggaaacgcacctcagttgcagagtaacgcttgactcaaccctagaaaggatttcaatcatcaattcctctgggagaatcgtg |
7342315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 7370907 - 7370980
Alignment:
| Q |
195 |
ttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaactctagaaaggatttcgataatcag |
268 |
Q |
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|||||| ||||||| || ||||||||||||||| || ||||| ||||||||||||| ||| ||||| ||||| |
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| T |
7370907 |
ttccacaacttgcaaacacacctcaattgcagagtattgcttgaatcaactctagaaatgatctcgattatcag |
7370980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 7337032 - 7337120
Alignment:
| Q |
195 |
ttccaccacttgcatacgcacctcaattgcagataatcgcttggttcaactctagaaaggatttcgataatcagatcctccgggagtat |
283 |
Q |
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|||||| ||||||| || ||| ||||||| | | || ||||| |||||| ||| ||||||||||||||||||| || ||||| ||||| |
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| T |
7337032 |
ttccacaacttgcaaacacacatcaattgaaaaggattgcttgattcaaccctaaaaaggatttcgataatcagttcatccggtagtat |
7337120 |
T |
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