View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_high_4 (Length: 616)
Name: NF16976_high_4
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Original strand, 11533010 - 11533589
Alignment:
| Q |
18 |
ggaggctggttcactaatgtaggaaactgggctgtgtgaagtatggaatctgagtgtgactactgcatatggcgtagactccaaacagcgaacatccttc |
117 |
Q |
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| T |
11533010 |
ggaggctggttcactaatgtaggaagctgggctgtgtgaagtatggaatctgagtgtgactactgcatatggtgtagactccaaacagcgaacatccttc |
11533109 |
T |
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| Q |
118 |
attcgaaacccctagaatgccccctctagaacgtttgttttgaagggcatttttggatttttgggtgttcaacattgttgcccccttgtcacgtgctttg |
217 |
Q |
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| T |
11533110 |
attcgaaacccctagaatgccccatctagaacgtttgtttttaagggcatttttggatttttgggtgttcaacattgttgcccccttgtcacgt------ |
11533203 |
T |
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| Q |
218 |
aatgctattacgtgctttgaatgctattacggcaagtggtggagcttgttttgtttctttgagggggccatagctaagtaatatatattatttgtgtaat |
317 |
Q |
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| T |
11533204 |
-------------gctttgaatgctattacggcaagtggtggagcttgtcttgtttctttgagggggcaatagctaagtaatatatattatttgtgtaat |
11533290 |
T |
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| Q |
318 |
gtaaatataagttggcattgaggtgaagcagtaaaaagtaaaaaccattttttatatcaagaattgagttcgacacactgaagacactttagtaacattt |
417 |
Q |
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| T |
11533291 |
gtaaatataagttggcattgaggtgaagcagtaaaaagtaaaaaccattttttatatcaagaattgagttcgacacactgaagacactttagtaacattt |
11533390 |
T |
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| Q |
418 |
tgtgcaattattcaatgttgaattgcaaaatcgaatactgccggaatcgatgccaatacctggcagcagttgcaaaattaacattttgctgctgcgtcac |
517 |
Q |
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| T |
11533391 |
tgtgcaattattcaatgttgaattgcaaaatcgaataccgccggaatcgatgccaagacctggcagcagttccaaaattaacattttgctgctgcgtcac |
11533490 |
T |
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| Q |
518 |
ttgcacgatatgataaatcaatgttaaacatcatatatattcctaatattttaataaaactagtggaataaagacttcccatatcaatgagaagctctg |
616 |
Q |
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| T |
11533491 |
ttgcacgatatgataaatcaatgttaaacatcatatatattcctaatattttaataaaactagtggaataaagacttcccatatcaatgagaatctctg |
11533589 |
T |
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