View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_high_40 (Length: 239)
Name: NF16976_high_40
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27586027 - 27585804
Alignment:
| Q |
1 |
aaattactctgtaaatttgtcatatagtaattattttctcatttcattggataaggggatctttacaatttgatatatatagttcctaatgtgaaaaatg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27586027 |
aaattactctataaatttgtcatatagtaattattttctcatttcattggataaggggatctttacaatttgatatatatagttcctaatgtgaaaaatg |
27585928 |
T |
|
| Q |
101 |
tctcaactaatctatatgtcagtttcctacaa--tgatattcatgtcatatttcaaatctcattcaagcgataagttatatgtttgaaggcatcttctgt |
198 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27585927 |
tctcaactaatctatatgtcagtttcctacaatcttatattcatgtcatatttcaaatctcattcaagcgataagttatatgtttgaaggcatcttctgt |
27585828 |
T |
|
| Q |
199 |
gcaaggaatggtgagacctcccat |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
27585827 |
gcaaggaatggtgagacctcccat |
27585804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 27563167 - 27563370
Alignment:
| Q |
17 |
ttgtcatatagtaatta-ttttctcatttcattggataaggggatctttacaatttgatatatatagttcctaatgtgaaaaatgtctcaactaatctat |
115 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||||||||||||| |
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| T |
27563167 |
ttgtcatatagtaatttgttttctcatttcattggaaaaggg-atctttacaattcgatatg----gttcctaatttaaaaaatgtctcaactaatctat |
27563261 |
T |
|
| Q |
116 |
atgtcagtttcctacaatgata--ttcatgtcatatttcaaatctcattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgag |
213 |
Q |
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|||||||||||||||||| || ||||||| |||||||| | ||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
27563262 |
atgtcagtttcctacaatcttacattcatgtaatatttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgag |
27563361 |
T |
|
| Q |
214 |
acctcccat |
222 |
Q |
| |
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|| ||||| |
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| T |
27563362 |
gccacccat |
27563370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 27475540 - 27475604
Alignment:
| Q |
159 |
cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
|
||||||||| | |||||||||||| |||| ||||||| | ||||||||||||||| || |||||| |
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| T |
27475540 |
cattcaagcaagaagttatatgttggaagacatcttcggagcaaggaatggtgaggccacccatg |
27475604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 27504101 - 27504038
Alignment:
| Q |
159 |
cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccat |
222 |
Q |
| |
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||||||||| | ||||||| |||| |||| ||||||| ||||||||||||||||| || ||||| |
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| T |
27504101 |
cattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccat |
27504038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 27415798 - 27415736
Alignment:
| Q |
161 |
ttcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
|
||||||||| | ||||| |||| ||| ||||||||||||||||||||||||| || |||||| |
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|
| T |
27415798 |
ttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccacccatg |
27415736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 27506879 - 27506813
Alignment:
| Q |
157 |
ctcattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
|
||||||||||| | ||||||| |||| ||| ||||||| ||||||||||||||||| || |||||| |
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|
| T |
27506879 |
ctcattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatg |
27506813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 27468303 - 27468352
Alignment:
| Q |
174 |
ttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||||||| || |||||| |
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|
| T |
27468303 |
ttatatgttggaagacatcttccgtgcaaggaatggtgaggccacccatg |
27468352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 27420575 - 27420523
Alignment:
| Q |
171 |
aagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||||||||| || |||||| |
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|
| T |
27420575 |
aagttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccatg |
27420523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 27423401 - 27423337
Alignment:
| Q |
159 |
cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
|
|||||||| || |||||||||||| ||| ||||||| |||||||||| |||||| || |||||| |
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|
| T |
27423401 |
cattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccacccatg |
27423337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 27478844 - 27478908
Alignment:
| Q |
159 |
cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
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||||||||| | |||||||||||| ||| ||||||| | ||||||||||||||| || |||||| |
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| T |
27478844 |
cattcaagcaagaagttatatgttggaacacatcttcggagcaaggaatggtgaggccacccatg |
27478908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 1756718 - 1756782
Alignment:
| Q |
159 |
cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccatg |
223 |
Q |
| |
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||||||||| | | || ||||||| |||||||||||| ||||||||||||||||| || |||||| |
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| T |
1756718 |
cattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatg |
1756782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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