View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16976_high_7 (Length: 578)
Name: NF16976_high_7
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 15419897 - 15420438
Alignment:
| Q |
19 |
aaccacagtgcatcaaagttcgggttccgaactcgccaagctaagaaaaatactagaaccaccatacggagaacaatcaacaacctgtgttcaaagataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15419897 |
aaccacagtgcatcaaagttcgggttccgaactcgccaagctaagaaaaatattagaaccaccatacggagaacaatcaacaacctgtgttcaaagataa |
15419996 |
T |
|
| Q |
119 |
gttaattattataagtaatacataattttgttatgaaaaccatgtactaatctttgaatcaatgtttgaacttatgtggtcgccaacaaatgtagcagct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15419997 |
gttaattattataagtaatacataattttgttatgaaaaccatgtattaatctttgaatcaatgtttgaacttatgtggtcgccaacaaatgtagcagct |
15420096 |
T |
|
| Q |
219 |
aaaatgttacaagtagtgcataccaacaattcaaaacttcaaatgtttatagtaaaatgactataacatcatgtttaattaagatcattatgaaatctca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15420097 |
aaaatgttacaagtagtgcataccaacaattcaaaacttcaaatgtttatagtaaaatgactataacatcatgtttaattaagatcattatgaaatctca |
15420196 |
T |
|
| Q |
319 |
caaatgactatcagagaccgtcgtaagatgactatcaacgtcattttaattattaatagtttctcctaaccaaaacaaaaaatgttgaaataagatcatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15420197 |
caaatgactatcagagaccgtcgtaagatgactatcaacgtcattttaattattaatagtttctcctaaccaaaacaaaaaatgttgaaataagatcatt |
15420296 |
T |
|
| Q |
419 |
atgaaatctcagaaatgatgcatgtctacaaggatctaccattatccaagacagataattttattttgaatgcaaaccatagacatataacctttataca |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
15420297 |
atgaaatctcagaaatgatgcatgtctacaaggatctaccattatccaagacaaataattttattttgaatgcaaaccatagacatataacctt--taaa |
15420394 |
T |
|
| Q |
519 |
tattgcaacaaaaactatataccataattaagaaaggtacctat |
562 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15420395 |
tattgtaacaaaaactatatagcataattaagaaaggtacctat |
15420438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University