View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16976_high_9 (Length: 455)
Name: NF16976_high_9
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 22 - 449
Target Start/End: Original strand, 45102813 - 45103243
Alignment:
| Q |
22 |
atgacacgttgt-tttcgtgatttctcgggatggtttttgtcgcggtgtataacagtacttaataaattatgtttctcaatcagataaacctctaagctc |
120 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45102813 |
atgacacgttggctttcgtgatttcttgggatggtttttgtcgcggtgtacaacagtattgaataaattatgtttctcaatcagataaacctctaagctc |
45102912 |
T |
|
| Q |
121 |
ttgtggaaccctcagtaacttgagcgttggagccaatcatcctttttatggatcgtcgccatcctacactacattcgagtaactccaactgttgtcttta |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45102913 |
ttgtggaaccctcaataacttgagcgttggagccaatcatcctttttatggatcgtcgccatcctacactacattcgagtaactccaactgttgtcttta |
45103012 |
T |
|
| Q |
221 |
gcttcatttaggatcacaaacatgattttcttcattttcacttctctttttcttatactaaatgatacaaaa-ag-aagnnnnnnncactttatttcttt |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| |
|
|
| T |
45103013 |
gcttcacttaggatcacaaacatgattttcttcattttcacttctctttttcttatactaaatgatacaaaagagaaaaaaaaaaacaatttatttcttt |
45103112 |
T |
|
| Q |
319 |
gttctttctcgcttgtttctttcttatgaacatattcttttccatagcctaacaaaattttagaagtctctacatctacatgatggtatgcatgatgcca |
418 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103113 |
gttctttctcgcttgtttctttcttctaaacatattcttttccattgcctaacaaaattctagaagtctctacatctacatgatggtatgcatgatgcca |
45103212 |
T |
|
| Q |
419 |
ttgattcctaccaataccatgtttcatctca |
449 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
45103213 |
ttgattcctaccaataccatgtctcatctca |
45103243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 18962668 - 18962619
Alignment:
| Q |
23 |
tgacacgttgttttcgtgatttctcgggatggtttttgtcgcggtgtata |
72 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
18962668 |
tgacatgttgctttcgtgatttctcgggacggtttttgtcgtggtgtata |
18962619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University