View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_1 (Length: 849)
Name: NF16976_low_1
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 436 - 826
Target Start/End: Complemental strand, 39690796 - 39690404
Alignment:
| Q |
436 |
tactctttagatgtgtaaaagtgagtgaattaataatgtttgatgagtaagaagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatcc |
535 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39690796 |
tactctttagatgtgtaagagtgagtgaattaataatgtttgatgagtaagaacatgaaaggaaaaagagagagaccaatgaagaaagggaaacttatcc |
39690697 |
T |
|
| Q |
536 |
aaccaccacgtttgctcccaatactcaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcactttgtgtgctcttt |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39690696 |
aaccaccacgtttgctcccaatactcaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcactttgtgtgctcttt |
39690597 |
T |
|
| Q |
636 |
tacaaaccgggtgtgttccttttataggaaatgttgatttccactttatagttaactatgttttttccttaat--taagcctttgtcgaaaacgtggaga |
733 |
Q |
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| T |
39690596 |
tacaaaccgggtgtgttccttttataggaaatgttgatttccactttatagttaactatgttttttccttaattataagcctttgtcgaaaacgtggaga |
39690497 |
T |
|
| Q |
734 |
attggtaactttttgttgaaaagaataaagaatttatctatgcaaaactacagaagtgactaaagtgatgttgattggatgagattgttcggg |
826 |
Q |
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| T |
39690496 |
attggtaactttttgttgaaatgaataaagaatttatctatgcaaaactacagaagtgactaaagtgatgttgattggatgagattgttcggg |
39690404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 39691231 - 39691017
Alignment:
| Q |
10 |
agaagcaaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatc |
109 |
Q |
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| T |
39691231 |
agaagcaaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatc |
39691132 |
T |
|
| Q |
110 |
tgagctgcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691131 |
tgagctgcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatac |
39691032 |
T |
|
| Q |
210 |
ctataattaatcaac |
224 |
Q |
| |
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||||||||||||||| |
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| T |
39691031 |
ctataattaatcaac |
39691017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 260 - 421
Target Start/End: Complemental strand, 39690981 - 39690820
Alignment:
| Q |
260 |
ttgacatgcttttgatatcaagtgattgagctcaagaatgagctcattgagcaacaaatagttcaggagatcgatctgaattcatattctgacggaaaca |
359 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39690981 |
ttgacatgctttttatatcaagtgattcagctcaagaatgagctcattgagcgacaaatagttcaggagatcgatctgaattcatattctgacggaaaca |
39690882 |
T |
|
| Q |
360 |
atcatcgactaaattttacttgctttttagccaaactctcgattattatatggttaagacac |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39690881 |
atcatcgactaaattttacttgctttttagccaaactctccattattatatggttaagacac |
39690820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 449 - 621
Target Start/End: Original strand, 39931573 - 39931743
Alignment:
| Q |
449 |
tgtaaaagtgagtgaattaataatgtttgatgagtaagaagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatccaaccaccacgttt |
548 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||| || |
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| T |
39931573 |
tgtaaaagtgagtgaattaataatgtttgatgagttaaaagatgaaaggaaaaagag--agaccaatgaagaaaggggaacttatccaaccgccacgctt |
39931670 |
T |
|
| Q |
549 |
gctcccaatactcaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcac |
621 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39931671 |
gctcccattacttaagctctcatctgcttcttttgaggatgcttctaccttaccatccattgttgcacttcac |
39931743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 487 - 621
Target Start/End: Complemental strand, 39699859 - 39699727
Alignment:
| Q |
487 |
aagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatccaaccaccacgtttgctcccaatactcaagctctcatctgcttcttttgagg |
586 |
Q |
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||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
39699859 |
aagatgaaaggaagaagagata--ccaatgaagaaagggaaacttatccaaccaccacgcttgctcccaatactcaaactctcatctgcttcttttgagg |
39699762 |
T |
|
| Q |
587 |
atgcttctaccttaccatccattgttgcacttcac |
621 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
39699761 |
atgcttctaccttaccatccattgttgcacttcac |
39699727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 39930986 - 39931190
Alignment:
| Q |
10 |
agaagcaaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatc |
109 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||| ||||||| |||||| || || | |||||||| ||| ||||||||||| ||||| ||| ||| |
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| T |
39930986 |
agaagcaaaggcaacatagaaagaaccaaagaaagaatcagcaacgattgcggccactactggaaatatactggtgcttccaacgacaacatttgaaatt |
39931085 |
T |
|
| Q |
110 |
tgagctgcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatac |
209 |
Q |
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|||| |||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||| |
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| T |
39931086 |
tgagttgcagtgatgctctttatattgaattctcttgtaagatatacaatcaagtttccaacaattccggtgcttccaagtgacatccccgctatcatac |
39931185 |
T |
|
| Q |
210 |
ctata |
214 |
Q |
| |
|
||||| |
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|
| T |
39931186 |
ctata |
39931190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 39700414 - 39700213
Alignment:
| Q |
16 |
aaaggcaactaagaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagct |
115 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||||||||||| |||| | ||| |||||| | | |||||||||||||||||||||||| |||||| |
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|
| T |
39700414 |
aaaggcaacagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagct |
39700315 |
T |
|
| Q |
116 |
gcattgatgctcttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataa |
215 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||| || || ||||||| | ||||| ||||||||||||| || ||||||||||| |
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| T |
39700314 |
gcattgatgctctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataa |
39700215 |
T |
|
| Q |
216 |
tt |
217 |
Q |
| |
|
|| |
|
|
| T |
39700214 |
tt |
39700213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 475 - 621
Target Start/End: Original strand, 39936980 - 39937111
Alignment:
| Q |
475 |
ttgatgagtaagaagatgaaaggaaaaagagagagaccaatgaagaaagtgaaacttatccaaccaccacgtttgctcccaatactcaagctctcatctg |
574 |
Q |
| |
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||||||||| | |||||||||| ||||||||||| |||||||||||| | ||||||||||||||| ||||| || |||||||| || |
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| T |
39936980 |
ttgatgagttaaaagatgaaagtaaaaagagagaaaccaatgaagaaggggaaacttatccaaccgccacgctt---------------gctctcatgtg |
39937064 |
T |
|
| Q |
575 |
cttcttttgaggatgcttctaccttaccatccattgttgcacttcac |
621 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
39937065 |
cttcttttgaggatgctgctagcttaccatccattgttgcacttcac |
39937111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 39935317 - 39935391
Alignment:
| Q |
84 |
tgcttccaacaacaacgtttacaatctgagctgcattgatgctcttgatattgaattcacttataagatatacaa |
158 |
Q |
| |
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||||||| | ||||| ||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
39935317 |
tgcttccgataacaatgtttacaatctgagcagcaatgatgctctttatattgaattcttgtataagatatacaa |
39935391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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