View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16976_low_10 (Length: 452)
Name: NF16976_low_10
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 154 - 431
Target Start/End: Original strand, 6591595 - 6591876
Alignment:
| Q |
154 |
tagaattaattagaagcaagttacaattttacata----gctcttctctaacaatttcatataaataacaaaaacagtacgtactcaccaccatttccaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6591595 |
tagaattaattagaagcaagttacaattttacatatatagctcttctctaacaatttcatataaataacaaaaacagtacgtactcaccaccatttccaa |
6591694 |
T |
|
| Q |
250 |
ttctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataacttagatcaatg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6591695 |
ttctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataacttagatcaatg |
6591794 |
T |
|
| Q |
350 |
cacggggtaggaagctctactggcacaacccctaaagccaaatactggagcagaaacaagacagaaagtgaatggattacat |
431 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6591795 |
caccgggtaggaagctctactggcacaacccctaaagccaaatactggagcagaaacaagacagaaagtgaatggattacat |
6591876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 230 - 401
Target Start/End: Original strand, 6600958 - 6601129
Alignment:
| Q |
230 |
gtactcaccaccatttccaattctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatgg |
329 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
6600958 |
gtactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatgcgtatgg |
6601057 |
T |
|
| Q |
330 |
aaatataacttagatcaatgcacggggtaggaagctctactggcacaacccctaaagccaaatactggagca |
401 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| |||||| ||| |||| | ||||||||||||||||| |
|
|
| T |
6601058 |
aaagataacttagatcaatgcaaggggtaggaagctttactggtacagcccccagagccaaatactggagca |
6601129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 6591438 - 6591564
Alignment:
| Q |
1 |
tattctcacatgcttcacttgcatgactggctgatccaaataggcacggggtgtcgacggaacaggttgctcctcagatcgtgcctacatacatccaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6591438 |
tattctcacatgcttcacttgcatgattggctgatccaaataggcacggggtgtcatctggacaggttgctcctcagatcgtgcctacatacatacaatc |
6591537 |
T |
|
| Q |
101 |
gtaacacacaagtgggttgatgtactt |
127 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
6591538 |
gtaacacacaagtgggttgaggtactt |
6591564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 3373598 - 3373523
Alignment:
| Q |
257 |
agattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaa |
332 |
Q |
| |
|
||||||||| ||||||||| || ||||| |||||||||||| ||||| | ||||||||||||||||||| ||||| |
|
|
| T |
3373598 |
agattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgcataaggaaa |
3373523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 401
Target Start/End: Complemental strand, 3379611 - 3379477
Alignment:
| Q |
267 |
agcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataacttagatcaatgcacggggtaggaagctc |
366 |
Q |
| |
|
||||||||| || ||||| ||||| ||||| ||||| | ||||||||||||| |||| ||||| |||||||||||| || || || |||||||||| |
|
|
| T |
3379611 |
agcttctgagcaagcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataacttagatcgatacaaggtgtaggaagctt |
3379512 |
T |
|
| Q |
367 |
tactggcacaacccctaaagccaaatactggagca |
401 |
Q |
| |
|
||||| ||| | ||| |||||||||||| |||| |
|
|
| T |
3379511 |
tactgatacatcacctgcagccaaatactgaagca |
3379477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 4322354 - 4322422
Alignment:
| Q |
336 |
aacttagatcaatgcacggggtaggaagctctactggcacaacccctaaagccaaatactggagcagaa |
404 |
Q |
| |
|
||||||||||||| || || |||||||||| |||||||| ||| ||| |||||||||||| ||||||| |
|
|
| T |
4322354 |
aacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaa |
4322422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 4334219 - 4334307
Alignment:
| Q |
313 |
gaagtttatgcatatggaaatataacttagatcaatgcacggggtaggaagctctactggcacaacccctaaagccaaatactggagca |
401 |
Q |
| |
|
|||||||||| || ||||| | ||||||||| ||| || || |||||||||| |||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
4334219 |
gaagtttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagca |
4334307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 401
Target Start/End: Complemental strand, 20953877 - 20953718
Alignment:
| Q |
242 |
atttccaattctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataactta |
341 |
Q |
| |
|
||||| |||| ||| ||||||||| ||||||||| || ||||| |||||| ||||| |||||| | | |||||||||||||| ||||| ||| |||| |
|
|
| T |
20953877 |
atttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtcgaagtttatgcataaggaaagatagctta |
20953778 |
T |
|
| Q |
342 |
gatcaatgcacggggtaggaagctctactggcacaacccctaaagccaaatactggagca |
401 |
Q |
| |
|
||| ||| || || |||||||||| |||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
20953777 |
gataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagca |
20953718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 365
Target Start/End: Complemental strand, 20935339 - 20935216
Alignment:
| Q |
242 |
atttccaattctcgtagattaggtaagcttctgaacaggcaaacagcagctgaaatctcctttgaatcattgaagtttatgcatatggaaatataactta |
341 |
Q |
| |
|
||||| |||| ||| ||||||||| ||||||||| || ||||| |||||| ||||| ||||| | |||| ||||||||||| | ||||| || ||||| |
|
|
| T |
20935339 |
atttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatcgaagtttatgctcaaggaaagatgactta |
20935240 |
T |
|
| Q |
342 |
gatcaatgcacggggtaggaagct |
365 |
Q |
| |
|
|||| || || || |||||||||| |
|
|
| T |
20935239 |
gatccatacaaggtgtaggaagct |
20935216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University