View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16976_low_11 (Length: 440)
Name: NF16976_low_11
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 196 - 440
Target Start/End: Original strand, 53755943 - 53756187
Alignment:
| Q |
196 |
caaaagcatgagaaagtgagtgagattgagatttgatttgaaacacacgtaccctttgacgaactccaagtgggtaaatgtcaccgtaagtaacattcca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53755943 |
caaaagcatgagaaagtgagtgagattgagatttgatttgaaacacacgtaccctttgacgaactccaagtgggtaaatgtcaccgtaagtaacattcca |
53756042 |
T |
|
| Q |
296 |
gttgaagaatttatagggatcttcagctgaagtaatgtgaaacaaagaaggagcaacacatagaagcaaggctccaacagcagctaaattgagagtcatt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53756043 |
gttgaagaatttatagggatcttcagctgaagtaatgtgaaacaaagaagtagaaacacatagaagcaaggctccaacagcagctaaattgagagtcatt |
53756142 |
T |
|
| Q |
396 |
ttgctcccacacacttaactaacaaaaactcttttgcctctctac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53756143 |
ttgctcccacacacttaactaacaaaaaatcttttgcctctctac |
53756187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 53755747 - 53755867
Alignment:
| Q |
1 |
gcttgtaccatgagatgagaaagggttcattcaaactgttgaagacattgataatgaggttgtcgtttgtaacagaatgaatgtctggaccagggaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53755747 |
gcttgtaccatgagatgagaaagggttcattcaaactgttgaagacattgataatgaggttgtcgtttgtaacagaatgaatgtctggaccagggaattg |
53755846 |
T |
|
| Q |
101 |
gccattgatcaatataccctg |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
53755847 |
gccattgatcaatataccctg |
53755867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 8572674 - 8572776
Alignment:
| Q |
7 |
accatgagatgagaaagggttcattcaaactgttgaagacattgataatgaggttgtcgtttgtaacagaatgaatgtctggaccagggaattggccatt |
106 |
Q |
| |
|
||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
8572674 |
accatgaaatgagaaaaggttcatccaagctgttgaagacattgataatgagattatcatttgtcacagaatgaatgtctggtcctgggaattggccatt |
8572773 |
T |
|
| Q |
107 |
gat |
109 |
Q |
| |
|
||| |
|
|
| T |
8572774 |
gat |
8572776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 8572871 - 8572938
Alignment:
| Q |
255 |
cgaactccaagtgggtaaatgtcaccgtaagtaacattccagttgaagaatttatagggatcttcagc |
322 |
Q |
| |
|
||||| |||||||| ||||||||||| || ||||| |||||||||||||| | || ||||||||||| |
|
|
| T |
8572871 |
cgaacaccaagtggataaatgtcaccataggtaacgttccagttgaagaacctgtatggatcttcagc |
8572938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 44037417 - 44037474
Alignment:
| Q |
265 |
gtgggtaaatgtcaccgtaagtaacattccagttgaagaatttatagggatcttcagc |
322 |
Q |
| |
|
|||| ||||||||||| ||||||| | |||||| ||||||| |||| ||||||||||| |
|
|
| T |
44037417 |
gtggataaatgtcaccataagtaaaagtccagtcgaagaatctataaggatcttcagc |
44037474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University