View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_15 (Length: 410)
Name: NF16976_low_15
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 5382839 - 5383223
Alignment:
| Q |
11 |
caaaggttacacgggatgctttccattttcgccatagcgatgttacaacatttggaagtatcagtattgcttgtagagagatgttctctctttcttttcc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5382839 |
caaaggttacacgggatgctttccattttcgccatagcgatgctacaacatttggaagtatcagtactgcttgtagagagatgttctctctttcttttcc |
5382938 |
T |
|
| Q |
111 |
taactcccgggtagagtttattgggcgataagcgaattcgggtgctcatactctcacaagagaagccgttttcctaactagtaccgctacttattatgtt |
210 |
Q |
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|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
5382939 |
taactctcggatagagtttattggacgataagcgaattcgggtgctcatactctcgcaagagaagccgttttcctagctagtcctgctacttattatgtt |
5383038 |
T |
|
| Q |
211 |
atcctaaactgtattgaaatactataaatcattacaatnnnnnnntatctacatgaaaattcgttgcaataaaaaatagaataaaacgatatagttctag |
310 |
Q |
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||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5383039 |
atcctaaactgtattgaaacactataattcattacaataaaaaaatatctacatgaaaattcgttgcaataaaaaatagaataaaacgatatagttctag |
5383138 |
T |
|
| Q |
311 |
ctcgtgtacgatacacacagctagattatcttaatttaaagtttaagttaacttcatcactctatagttagtggacgatgttttt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5383139 |
ctcgtgtacgatacacacagctagattatcttaatttaaagtttaagttaacttcatcactctatagttagtggacgatgttttt |
5383223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 25393247 - 25393463
Alignment:
| Q |
13 |
aaggttacacgggatgctttccattttcgccatagcgatgttacaacatttggaagtatcagtattgcttgtagagagatgttctctctttcttttccta |
112 |
Q |
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||||||||||||||||| ||||||| | |||||||||||||||| ||||||||| |||| | |||||||||||| |||||||||||||||||| | |
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| T |
25393247 |
aaggttacacgggatgcattccattcacaccatagcgatgttacagaatttggaagcatcattgcagcttgtagagagttgttctctctttcttttctaa |
25393346 |
T |
|
| Q |
113 |
actcccgggtagagtttattgggcgataagcgaattcgggtgctcatactctcacaagagaagccgttttcctaactagtaccgctacttattatgttat |
212 |
Q |
| |
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|||| |||||||||||| || | ||| |||||||||||| ||||||| ||||| |||||||||| |||| | || ||||| || | |||| |||||| || |
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| T |
25393347 |
actctcgggtagagtttgttagacgacaagcgaattcggctgctcatgctctcgcaagagaagctgtttccttagctagtcccaccactttttatgtaat |
25393446 |
T |
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| Q |
213 |
cctaaactgtattgaaa |
229 |
Q |
| |
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|| ||| |||||||||| |
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| T |
25393447 |
cccaaattgtattgaaa |
25393463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 44675244 - 44675461
Alignment:
| Q |
13 |
aaggttacacgggatgctttccattttcgccatagcgatgttacaacatttggaagtatcagtattgcttgtagagagatgttctctctttcttttccta |
112 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||||||||| ||||||||| |||| | |||||||||||| |||||||||||||||||| | |
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| T |
44675244 |
aaggttacacgggatgcattccattcacaccatagcgatgttacagaatttggaagcatcattgcggcttgtagagagttgttctctctttcttttctaa |
44675343 |
T |
|
| Q |
113 |
act-cccgggtagagtttattgggcgataagcgaattcgggtgctcatactctcacaagagaagccgttttcctaactagtaccgctacttattatgtta |
211 |
Q |
| |
|
||| |||||||||||||| || ||||| |||||||||||| ||||||| ||||| ||||||||||||||| | || ||||| || ||||||||||| | |
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| T |
44675344 |
actccccgggtagagtttgttaggcgacaagcgaattcggctgctcatgctctcgcaagagaagccgtttccttagctagtcccatcacttattatgtaa |
44675443 |
T |
|
| Q |
212 |
tcctaaactgtattgaaa |
229 |
Q |
| |
|
||| ||| |||||||||| |
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|
| T |
44675444 |
tcccaaattgtattgaaa |
44675461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 30870727 - 30870932
Alignment:
| Q |
23 |
gggatgctttccattttcgccatagcgatgttacaacatttggaagtatcagtattgcttgtagagagatgttctctctttcttttcctaactcccgggt |
122 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||| ||||||||| |||| | |||||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
30870727 |
gggatgctttccattctcgccataccgatattactgaatttggaagcatcatcactgcttgtagagaaatgttctctacttcttttcctaactcctgggt |
30870826 |
T |
|
| Q |
123 |
agagtttattgggcgataagcgaattcgggtgctcatactctcacaagagaagccgttttcctaactagtaccgctacttattatgttatcctaaactgt |
222 |
Q |
| |
|
|||||||||| || || ||| ||||| || |||||| |||| ||||||||| | ||| |||| ||||| || ||||||||||||| |||||||| ||| |
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| T |
30870827 |
agagtttattaggtgacaagtgaatttggcggctcatgctcttgcaagagaagtcatttccctagctagtcccactacttattatgtaatcctaaattgt |
30870926 |
T |
|
| Q |
223 |
attgaa |
228 |
Q |
| |
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|||||| |
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|
| T |
30870927 |
attgaa |
30870932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 9530442 - 9530645
Alignment:
| Q |
25 |
gatgctttccattttcgccatagcgatgttacaacatttggaagtatcagtattgcttgtagagagatgttctctctttcttttcctaactcccgggtag |
124 |
Q |
| |
|
||||||| ||||| |||||||| |||| |||| ||||||||| |||| | | |||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
9530442 |
gatgcttgccattctcgccataccgatattactgaatttggaagcatcatcactacttgtagagagatgttctctgcttcttttcctaactcccgggtag |
9530541 |
T |
|
| Q |
125 |
agtttattgggcgataagcgaattcgggtgctcatactctcacaagagaagccgttttcctaactagtaccgctacttattatgttatcctaaactgtat |
224 |
Q |
| |
|
|||||||| ||||| ||| |||||||| ||||||||||| ||||||||| ||| | || ||||| || ||| ||||||||| ||||||| ||||| |
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| T |
9530542 |
agtttattaggcgacaagtgaattcggcggctcatactcttgcaagagaagtaatttccttagctagtcccactatttattatgtaatcctaagttgtat |
9530641 |
T |
|
| Q |
225 |
tgaa |
228 |
Q |
| |
|
|||| |
|
|
| T |
9530642 |
tgaa |
9530645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 23477003 - 23476938
Alignment:
| Q |
112 |
aactcccgggtagagtttattgggcgataagcgaattcgggtgctcatactctcacaagagaagcc |
177 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| ||| |||||| || | ||||||||||| |
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|
| T |
23477003 |
aactcccgggtagagtttattaggcgacaagcgaatgcggcggctcatgctttagcaagagaagcc |
23476938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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