View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16976_low_17 (Length: 387)
Name: NF16976_low_17
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 46670521 - 46670160
Alignment:
| Q |
19 |
taaaattggaagattaattaatacctgatatactcagcttgttctaacgtgcacaagtgatctaagcggtgaaccatgcaagatcattttttaatggcgc |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46670521 |
taaagttggaagattaattaatacctgatatactcagcttgttctaacgtgcacaagtgatctaagcggtgtaccatgcaagatcattttttaatggcgc |
46670422 |
T |
|
| Q |
119 |
ttactagcttgtgctctaacacttagatacatgttgaggaacttacatgcagcaattttatattgaaaagaacaatatttgtatttttaagaatttaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46670421 |
ttactagcttgtgctctaacacttagacacatgttgaggaacttacatgcagcaattttatattgaaaagaacaatatttgtatttttaagaatttaaat |
46670322 |
T |
|
| Q |
219 |
ac----aatttgaggtagaattattatatgtagatcattaacattaacacgtattctaaagacacatgttaacatttatannnnnnnnaatattagataa |
314 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46670321 |
acatgaaatttgaggcagaattattatatgtagatcattaacattaacacgtgttctaaagacacatgttaacatttata-tttttttaatattagataa |
46670223 |
T |
|
| Q |
315 |
taaagttctaccaaatgcaatgatgcaccattcacgcaaaatctactcctttcttctcctttg |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
46670222 |
taaagttctaccaaatgcaatgatacaccattcatgcaaaatctactcctttcttcccctttg |
46670160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University