View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_19 (Length: 380)
Name: NF16976_low_19
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 7352923 - 7352841
Alignment:
| Q |
61 |
attttgatgctattttttgtgtttaattagaaatcacagatagtttcttactcaaatggttgtaaatgaatggattacttagttgaa |
147 |
Q |
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| T |
7352923 |
attttgatgctattgtttgtgttca----gaaatcagagattgtttcttactcaaatggttgtaaatgaatggattagttagttgaa |
7352841 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 7332139 - 7332107
Alignment:
| Q |
102 |
agtttcttactcaaatggttgtaaatgaatgga |
134 |
Q |
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| T |
7332139 |
agtttcttactcaaatggttgtaaatgaatgga |
7332107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 7291131 - 7291095
Alignment:
| Q |
112 |
tcaaatggtt-gtaaatgaatggattacttagttgaa |
147 |
Q |
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| T |
7291131 |
tcaaatggtttgtaaatgaatggattacttagttgaa |
7291095 |
T |
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