View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_20 (Length: 349)
Name: NF16976_low_20
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_20 |
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| [»] scaffold0759 (1 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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| [»] scaffold0112 (1 HSPs) |
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| [»] scaffold0233 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 12128303 - 12128446
Alignment:
| Q |
9 |
ttatcatgcatctactactatgaataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggatttcgataaatgatgcatgtg |
108 |
Q |
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| T |
12128303 |
ttatcatgcatatactactttaaataaaacaacctttgtttccaattgatcaattggatttcttgaatatccgtttggattttgataaaaaatgcatgtg |
12128402 |
T |
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| Q |
109 |
catgggtgtggtaatgtaatataaaactattgtactgttacttt |
152 |
Q |
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| T |
12128403 |
catgggtatggtattgtaataaaaaagtattgtagtgttacttt |
12128446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 12110468 - 12110612
Alignment:
| Q |
9 |
ttatcatgcatctactactatgaataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggatttcgat-aaatgatgcatgt |
107 |
Q |
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| T |
12110468 |
ttatcatgcatgtactactttaaataaaacaacctttgtttccaatttatcaattggatttcttgaatatccgtttggattttgataaaaaaatgcatgt |
12110567 |
T |
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| Q |
108 |
gcatgggtgtggtaatgtaatataaaactattgtactgttacttt |
152 |
Q |
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| T |
12110568 |
gcatgggtgtggtattgtaataaaaaagtattgtagtgttacttt |
12110612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 12124170 - 12124218
Alignment:
| Q |
21 |
tactactatgaataaaacaacctttgtttccaattgatcgattggattt |
69 |
Q |
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| T |
12124170 |
tactactttaaataaaacaacctttgtttccaattgatcgattggattt |
12124218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 12124211 - 12124268
Alignment:
| Q |
83 |
ttggatttcgataaatgatgcatgtgcatgggtgtggtaatgtaatataaaactattg |
140 |
Q |
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| T |
12124211 |
ttggattttgataaaaaatgcatctgcattggtgtggtattgtaatataaaagtattg |
12124268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 2617 - 2736
Alignment:
| Q |
1 |
catgcatgttatcatgcatctactactatgaataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggatttcgataaatga |
100 |
Q |
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| T |
2617 |
catgcatgttatcatgcatctactactttaaataaaacaacctttatttcctattgatcaattgtatttctttgatatccgtctggattttaataaatga |
2716 |
T |
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| Q |
101 |
tgcatgtgcatgggtgtggt |
120 |
Q |
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| T |
2717 |
tgcttgtacatgggtgtggt |
2736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 26834944 - 26835063
Alignment:
| Q |
1 |
catgcatgttatcatgcatctactactatgaataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggatttcgataaatga |
100 |
Q |
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|||| |||||||||||| | || |||| | ||||||||||||||||||||||||||||| |||| ||||||| || ||| || ||||||| |||||||| |
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| T |
26834944 |
catgtatgttatcatgcttttaatactttaaataaaacaacctttgtttccaattgatcaattgtatttctttgatatccgtctggattttaataaatga |
26835043 |
T |
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| Q |
101 |
tgcatgtgcatgggtgtggt |
120 |
Q |
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| T |
26835044 |
tgcatgtacatgggtgtggt |
26835063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 26792484 - 26792573
Alignment:
| Q |
1 |
catgcatgttatcatgcatctactactatgaataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggattt |
90 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||| |||| ||||||| || ||| || ||||||| |
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| T |
26792484 |
catgcatgttatcatgcatctactactttaaataaaacaacctttatttcctattcatcaattgtatttctttgatatccgtctggattt |
26792573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26729823 - 26729883
Alignment:
| Q |
1 |
catgcatgttatcatgcatctactactatgaataaaacaacctttgtttccaattgatcgattg |
64 |
Q |
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| T |
26729823 |
catgcatgttatcatgcatctactt---taaataaagcaacctttgtttccaatcgatcaattg |
26729883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 6586 - 6498
Alignment:
| Q |
31 |
aataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggatttcgataaatgatgcatgtgcatgggtgtggt |
120 |
Q |
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| T |
6586 |
aataaaacaacctt-gtttctaattgatcaattgtatttcttcgatatccgtctggattttaataaatgatgcatgtgcatgggtgtggt |
6498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 21303 - 21380
Alignment:
| Q |
13 |
catgcatctactactatgaataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggattt |
90 |
Q |
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| T |
21303 |
catgcatctactactttaaataaaacaacctttgttttcaattgatcaattgtatttcttcgatatctgtctggattt |
21380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17186 - 17086
Alignment:
| Q |
1 |
catgcatgttatcatgcatctactactatgaataaaacaacctttgtttccaattgatcgattggatttcttcgacatctgtttggatttcgataaatga |
100 |
Q |
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||||||| |||||||||||||||| | ||||||||||| ||||||| ||||||||| |||| |||||||||| ||| || ||||||| ||| |||| |
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| T |
17186 |
catgcattttatcatgcatctactt---taaataaaacaacttttgttttcaattgatcaattgtatttcttcgatatccgtctggattttaatagatga |
17090 |
T |
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| Q |
101 |
tgca |
104 |
Q |
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|||| |
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| T |
17089 |
tgca |
17086 |
T |
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Target: scaffold0233 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17915 - 17959
Alignment:
| Q |
1 |
catgcatgttatcatgcatctactactatgaataaaacaaccttt |
45 |
Q |
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|||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
17915 |
catgcatgttatcatgcatctaatactttaaataaaacaaccttt |
17959 |
T |
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