View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_21 (Length: 348)
Name: NF16976_low_21
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 6967250 - 6967570
Alignment:
| Q |
11 |
cacagatttgggcactataatttatg-aaatagtcattaatttgttctaattcagtttaaatgaattctacaaacttaactaaactcatggtcaccacat |
109 |
Q |
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| T |
6967250 |
cacagatttgggcactataatttatggaaatagtcattaatttgttctaaatcagtttaaatgaattctacaaacttaactaaactcatggtcaccacat |
6967349 |
T |
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| Q |
110 |
tacatgacaatacaagtagtgtgacaagcaagcaactgtggctatgttgtcttttgcatgtggtcaaaagtccaacctgtttctgaaacagtgtactatg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6967350 |
tacatgacaatacaagtagtgtgacaagcaagcaactgtggctatgttgtcttttgcatgtggtcaaaagtccaacctgtttctggaacagtgtactatg |
6967449 |
T |
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| Q |
210 |
aaaaagacatgcaattctgattcaagaatcaagatcaactatcaacatctcataatcatattttgtccttatacgtaacaaacacatgagaaacaaatgt |
309 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967450 |
aaaaagacatgcaagtctgattcaagaatcaagatcaactatcaacatctcatgatcatattttgtccttatacgtaacaaacacatgagaaacaaatgt |
6967549 |
T |
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| Q |
310 |
tcctagcctatatgtatacac |
330 |
Q |
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||||||||||||||||||||| |
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| T |
6967550 |
tcctagcctatatgtatacac |
6967570 |
T |
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