View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_23 (Length: 332)
Name: NF16976_low_23
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 110 - 322
Target Start/End: Original strand, 54022025 - 54022233
Alignment:
| Q |
110 |
tcaataaagttgtaacagaacatgtactaactaacattctttgggtctcaataattgattccccttttattcaaaaatcatcacatacatacaaaaaatg |
209 |
Q |
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| T |
54022025 |
tcaaaaaagttgtaacagaacatgtacta----acattctttgggtctcaatagttgattccccttttattcaaaaatcatcacatacatacaaaaaatg |
54022120 |
T |
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| Q |
210 |
aactttattacattcttaccccatcaagcaaaatgtttgaagacttgaagtctctatatataactgatttttctgaagtgtgtaagaaacccaaacctct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54022121 |
aactttattacattcttaccccatcaagcaaaatgtttgaagacttgaagtctctatatataactgatttttctgaagtgtgtaagaaacccaaacctct |
54022220 |
T |
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| Q |
310 |
agcagctcctatg |
322 |
Q |
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| T |
54022221 |
agcagctcctatg |
54022233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 54021961 - 54022031
Alignment:
| Q |
19 |
accgttgacaggtccaagctttgccaatccaaagtcagacaactttgcattgaaatcctgttattcaaaaa |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54021961 |
accgttgacaggtccaagctttgccaatccaaagtcagacaactttgcattgaaatcctgttattcaaaaa |
54022031 |
T |
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