View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16976_low_26 (Length: 299)

Name: NF16976_low_26
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16976_low_26
NF16976_low_26
[»] chr2 (17 HSPs)
chr2 (180-299)||(6421827-6421947)
chr2 (180-299)||(42514745-42514864)
chr2 (202-299)||(30313273-30313370)
chr2 (180-299)||(6421481-6421600)
chr2 (215-298)||(7598698-7598781)
chr2 (245-299)||(6421722-6421776)
chr2 (180-298)||(23346333-23346451)
chr2 (260-297)||(29873560-29873597)
chr2 (240-299)||(40733613-40733672)
chr2 (240-298)||(41283478-41283536)
chr2 (246-291)||(32778025-32778070)
chr2 (260-297)||(33561857-33561894)
chr2 (254-299)||(33954279-33954324)
chr2 (70-111)||(36785746-36785787)
chr2 (180-299)||(7598324-7598444)
chr2 (184-299)||(37106020-37106136)
chr2 (263-299)||(40679655-40679691)
[»] chr8 (16 HSPs)
chr8 (202-284)||(9620643-9620725)
chr8 (180-299)||(18371936-18372056)
chr8 (179-299)||(147547-147668)
chr8 (201-299)||(3669783-3669881)
chr8 (180-295)||(18372226-18372342)
chr8 (215-299)||(20995394-20995478)
chr8 (180-299)||(40518167-40518287)
chr8 (180-299)||(34834972-34835090)
chr8 (183-299)||(3038234-3038352)
chr8 (245-299)||(34629709-34629763)
chr8 (245-297)||(5420749-5420801)
chr8 (205-299)||(4154636-4154728)
chr8 (240-299)||(45122720-45122779)
chr8 (260-297)||(16524463-16524500)
chr8 (215-296)||(20870551-20870632)
chr8 (222-299)||(41129084-41129161)
[»] chr7 (13 HSPs)
chr7 (179-294)||(30253671-30253787)
chr7 (205-299)||(1085584-1085678)
chr7 (240-299)||(30244366-30244425)
chr7 (179-294)||(30244453-30244569)
chr7 (179-294)||(30245256-30245372)
chr7 (184-299)||(37533310-37533426)
chr7 (224-299)||(7517676-7517751)
chr7 (215-299)||(30245173-30245253)
chr7 (240-299)||(34218037-34218096)
chr7 (240-298)||(22567042-22567100)
chr7 (216-299)||(30253588-30253667)
chr7 (180-224)||(45434426-45434470)
chr7 (215-299)||(47129465-47129548)
[»] chr1 (19 HSPs)
chr1 (91-161)||(10351290-10351361)
chr1 (181-296)||(37850544-37850659)
chr1 (180-299)||(66414-66534)
chr1 (216-296)||(19283434-19283514)
chr1 (180-299)||(22077437-22077557)
chr1 (180-299)||(26661840-26661960)
chr1 (180-299)||(31767104-31767223)
chr1 (240-299)||(47380170-47380229)
chr1 (219-299)||(1188569-1188650)
chr1 (183-299)||(22077774-22077891)
chr1 (180-299)||(34364603-34364723)
chr1 (219-298)||(3875313-3875392)
chr1 (240-299)||(26661525-26661584)
chr1 (270-299)||(10351256-10351285)
chr1 (215-299)||(30697313-30697397)
chr1 (246-299)||(37555825-37555878)
chr1 (246-299)||(37556207-37556260)
chr1 (259-296)||(47379800-47379837)
chr1 (180-299)||(34649534-34649654)
[»] chr4 (15 HSPs)
chr4 (240-299)||(43174237-43174296)
chr4 (182-299)||(11783496-11783613)
chr4 (240-298)||(28034326-28034384)
chr4 (190-299)||(25483432-25483541)
chr4 (215-299)||(36608637-36608721)
chr4 (215-299)||(39792836-39792920)
chr4 (260-299)||(4955338-4955377)
chr4 (260-299)||(15841389-15841428)
chr4 (240-299)||(39404114-39404173)
chr4 (182-229)||(49076775-49076822)
chr4 (215-296)||(34004561-34004642)
chr4 (269-297)||(2740798-2740826)
chr4 (180-299)||(3340903-3341023)
chr4 (240-296)||(22183265-22183321)
chr4 (260-296)||(23556887-23556923)
[»] chr6 (15 HSPs)
chr6 (202-299)||(12071656-12071753)
chr6 (180-296)||(16454674-16454791)
chr6 (217-299)||(12085014-12085096)
chr6 (180-296)||(2579052-2579168)
chr6 (180-299)||(2578777-2578897)
chr6 (240-297)||(12092485-12092542)
chr6 (215-299)||(10074341-10074425)
chr6 (184-299)||(29518599-29518715)
chr6 (260-299)||(1127456-1127495)
chr6 (216-299)||(5832007-5832089)
chr6 (244-299)||(10902437-10902492)
chr6 (215-299)||(10073594-10073678)
chr6 (180-299)||(2579815-2579934)
chr6 (260-296)||(6071231-6071267)
chr6 (223-299)||(16455003-16455079)
[»] chr3 (10 HSPs)
chr3 (260-299)||(47964541-47964580)
chr3 (164-299)||(37990903-37991039)
chr3 (239-299)||(45395655-45395715)
chr3 (180-234)||(3135045-3135099)
chr3 (180-296)||(3135397-3135513)
chr3 (240-299)||(33803255-33803314)
chr3 (217-299)||(25755490-25755572)
chr3 (245-299)||(47964923-47964977)
chr3 (246-299)||(41359774-41359827)
chr3 (263-299)||(54017842-54017878)
[»] chr5 (8 HSPs)
chr5 (202-298)||(3622855-3622950)
chr5 (240-298)||(1028520-1028578)
chr5 (241-297)||(26590914-26590970)
chr5 (260-299)||(26074169-26074208)
chr5 (260-299)||(26074708-26074747)
chr5 (245-299)||(624292-624346)
chr5 (219-297)||(38427645-38427723)
chr5 (184-299)||(6500546-6500663)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 6421947 - 6421827
Alignment:
Q  180 tcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| | |  |||| |||||||| ||||| || ||||||||||||| ||    
T  6421947 tcgtaccctttgtcgaaccgaggctctaataccaccgttgggtcatgaggggagctcgggggaccgtccacatcgaggccagaacaaccacacaagttag 6421848  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||| ||||||||||||||    
T  6421847 agagacaccacactcttaccc 6421827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 42514864 - 42514745
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgaga 279  Q
    |||||||||| ||||||| | ||||||||| ||| ||||||||| ||||||||| | |  |||| |||||||| ||||  || ||||| ||||||| |||    
T  42514864 tcgtacccttcgtcgaacagggctctgataccactgttgggtcacgaggggagctcgggggaccgtccacatcgaggctagaacaaccccacaagtaaga 42514765  T
Q  280 gagacgccacactcttaccc 299  Q
    ||||||||||||||||||||    
T  42514764 gagacgccacactcttaccc 42514745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 30313370 - 30313273
Alignment:
Q  202 ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| ||| ||||||||| |||| |||||| |  || | || | ||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  30313370 ctctgataccactgttgggtcacgaggagagcccgggggatcgtcaaaatccaggccagagcaaccacacaagtgagagagacgccacactcttaccc 30313273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 6421600 - 6421481
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgaga 279  Q
    |||||||||||||||||| | ||||||||| ||| ||||||||| ||||||||| | |  |||| |||||||| || |  || ||||| ||||||  |||    
T  6421600 tcgtaccctttgtcgaacggtgctctgataccactgttgggtcacgaggggagctcgggggaccgtccacatcgagactagaacaaccgcacaagcaaga 6421501  T
Q  280 gagacgccacactcttaccc 299  Q
    ||||| ||||||||||||||    
T  6421500 gagacaccacactcttaccc 6421481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 7598781 - 7598698
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttacc 298  Q
    ||||||||||  ||||||||| || | || |||||||| | || ||| |||||||||||||||||||||| |||||||||||||    
T  7598781 gttgggtcatcgggggagcccagtgggccgtccacatcgatgcttgaacaaccacacaagtgagagagacaccacactcttacc 7598698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 6421776 - 6421722
Alignment:
Q  245 tccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| ||||| || ||||||||||||| |||||||| ||||||||||||||    
T  6421776 tccacatcgaggccggaacaaccacacaagttagagagacaccacactcttaccc 6421722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 23346451 - 23346333
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgaga 279  Q
    |||||||||  ||| ||||| ||||||||| ||  ||||||||||||||||||| | |  |||| |||||||| ||||  || ||||| ||||||  |||    
T  23346451 tcgtaccctacgtcaaaccgggctctgataccattgttgggtcatgaggggagctcgggcgaccgtccacatctaggctagaacaaccgcacaagcaaga 23346352  T
Q  280 gagacgccacactcttacc 298  Q
    |||||  ||||||||||||    
T  23346351 gagacatcacactcttacc 23346333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 29873560 - 29873597
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttac 297  Q
    |||||||||||||||||||||||||| |||||||||||    
T  29873560 gagcaaccacacaagtgagagagacgtcacactcttac 29873597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 40733672 - 40733613
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||| || | ||| | |||||||||| ||||||||| ||||||||||||||    
T  40733672 gaccatccacatcgagacttgaactaccacacaagcgagagagacaccacactcttaccc 40733613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 41283478 - 41283536
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttacc 298  Q
    |||| |||||||||||||  || |||||||||||   ||||||||||||||||||||||    
T  41283478 gaccgtccacatcaaggctagaacaaccacacaaacaagagagacgccacactcttacc 41283536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 32778025 - 32778070
Alignment:
Q  246 ccacatcaaggcctgagcaaccacacaagtgagagagacgccacac 291  Q
    ||||||||||| |  | |||||||||||||||||||||||||||||    
T  32778025 ccacatcaagggcaaatcaaccacacaagtgagagagacgccacac 32778070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 33561857 - 33561894
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttac 297  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  33561857 gagcaaccatacaagtgagagagacaccacactcttac 33561894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 33954279 - 33954324
Alignment:
Q  254 aggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||| || |||||| | ||||||||||||||||||||||||||||    
T  33954279 aggccagaacaaccatataagtgagagagacgccacactcttaccc 33954324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 36785746 - 36785787
Alignment:
Q  70 tgagtccatcaattcattatgatccccctcaaggggaagctc 111  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||    
T  36785746 tgagtccatcaattcatcatgctccccctcaagcggaagctc 36785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 7598444 - 7598324
Alignment:
Q  180 tcgtaccctttgtcgaacc-gagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| |||||||| | ||| ||||| ||  ||||||||| ||||||||  | |  |||| | |||||| |||| ||| ||||| ||||||||||    
T  7598444 tcgtacccttcgtcgaacctgggctttgataccagtgttgggtcacgaggggagatcaggggaccgttcacatcgaggcttgaacaaccgcacaagtgag 7598345  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||| ||| | ||||||||    
T  7598344 agagacaccatattcttaccc 7598324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 37106136 - 37106020
Alignment:
Q  184 accctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagag 282  Q
    |||||| ||||||||| | |||||||| ||| |||||||||  |||||||| | |  |||| |||||||| ||||  || |||||  |||||  ||||||    
T  37106136 acccttcgtcgaaccggggctctgataccactgttgggtcacaaggggagctcgggggaccgtccacatcgaggctagaacaaccgtacaagcaagagag 37106037  T
Q  283 acgccacactcttaccc 299  Q
    || ||||||||||||||    
T  37106036 acaccacactcttaccc 37106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 40679655 - 40679691
Alignment:
Q  263 caaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  40679655 caaccccacaagtaagagagacgccacactcttaccc 40679691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 9620643 - 9620725
Alignment:
Q  202 ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagac 284  Q
    |||||||| || |||||||||| ||||||||||| |  |||| |||||||| |||||||||||||||||||||||||||||||    
T  9620643 ctctgataccatcgttgggtcacgaggggagcccgggggaccgtccacatccaggcctgagcaaccacacaagtgagagagac 9620725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 18371936 - 18372056
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtag-accatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||||| | |  | ||| | |||||  ||||  |||||||| |||||| |||    
T  18371936 tcgtaccctttgtcgaaccaggctctgataccactgttgggtcatgaggggagctcgggggaaccgttcacattgaggctagagcaaccgcacaagcgag 18372035  T
Q  279 agagacgccacactcttaccc 299  Q
    ||| || ||||||||||||||    
T  18372036 agaaacaccacactcttaccc 18372056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 299
Target Start/End: Complemental strand, 147668 - 147547
Alignment:
Q  179 atcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccct-gtagaccatccacatcaaggcctgagcaaccacacaagtg 276  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||  | |  ||||| ||||||||| ||  || | ||| ||||||      
T  147668 atcgtaccctttgtcgaaccggggctctgatatcactgttgggtcatg-ggggagctatgggggaccacccacatcaatgctagaactaccgcacaagca 147570  T
Q  277 agagagacgccacactcttaccc 299  Q
    |||||||||||||||||||||||    
T  147569 agagagacgccacactcttaccc 147547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 3669881 - 3669783
Alignment:
Q  201 gctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||| ||||||||||||| |||||||||   |  ||||||||||||| ||||  || ||||| ||||||  |||||||| ||||||||||||||    
T  3669881 gctctgataccaccgttgggtcacgaggggagctagggggaccatccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc 3669783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 18372226 - 18372342
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtag-accatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||||||||||||  ||||||||| |||  |||||||||||||||||| | |  | ||| |||||||| || |   ||||||| |||||| |||    
T  18372226 tcgtaccctttgtcgaaccaggctctgataccactattgggtcatgaggggagctcgggggaaccgtccacatcgagactaaagcaaccgcacaagcgag 18372325  T
Q  279 agagacgccacactctt 295  Q
    |||||| ||||||||||    
T  18372326 agagacaccacactctt 18372342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 20995394 - 20995478
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||| ||||||||||     ||||| ||| ||| ||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  20995394 gttgggtcacgaggggagccagagggaccacccatatctaggccagagcaaccacacaagtgagagagacaccacattcttaccc 20995478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 40518287 - 40518167
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcat-gaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| ||||||| | ||||||||| ||  ||| |||||  | ||||||| | |  |||| |||||||||||||  || ||||||||||||  ||    
T  40518287 tcgtacccttcgtcgaacggggctctgataccattgtttggtcaccggggggagctcgggggaccgtccacatcaaggctagaacaaccacacaagcaag 40518188  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||||||||||||||||||    
T  40518187 agagacgccacactcttaccc 40518167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 34835090 - 34834972
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgaga 279  Q
    |||||||||| ||||||||| ||||||||| ||| |||||||||  |||| ||| |    || |||||||||| ||||  || ||||||||||||  |||    
T  34835090 tcgtacccttcgtcgaaccgggctctgataccactgttgggtcactaggg-agcgcaagggatcatccacatcgaggctagaacaaccacacaagcaaga 34834992  T
Q  280 gagacgccacactcttaccc 299  Q
    ||||| ||||||||||||||    
T  34834991 gagacaccacactcttaccc 34834972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 3038234 - 3038352
Alignment:
Q  183 taccctttgtcgaaccgagctctgatatcaccgttgggtca-tgag-gggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagag 280  Q
    |||||||||||||||   ||||||||| ||| ||||||||| |||| |||||| | |  |||| |||||||| ||||  || ||||||||||||  ||||    
T  3038234 taccctttgtcgaacgaggctctgataccactgttgggtcactgagagggagctcggaggaccgtccacatcgaggctagaacaaccacacaagcaagag 3038333  T
Q  281 agacgccacactcttaccc 299  Q
    ||| |||||||||||||||    
T  3038334 agatgccacactcttaccc 3038352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 34629709 - 34629763
Alignment:
Q  245 tccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||||  | | ||| |||||||||||||||||||||||||||||||    
T  34629709 tccacatcaaggccataactaccgcacaagtgagagagacgccacactcttaccc 34629763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 5420801 - 5420749
Alignment:
Q  245 tccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttac 297  Q
    |||||||| |||| ||| |||||||||||||||| |||||| |||||||||||    
T  5420801 tccacatcgaggcttgaacaaccacacaagtgagggagacgtcacactcttac 5420749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 4154636 - 4154728
Alignment:
Q  205 tgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||| ||| |||||||||||| ||||| ||    |||||  |||||| ||||| ||||||||||||||  | ||||||||||||||||||||||    
T  4154636 tgataccactgttgggtcatgaagggagtccgagggaccactcacatctaggccagagcaaccacacaa--gcgagagacgccacactcttaccc 4154728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 45122779 - 45122720
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||| |||||||| |||| ||| ||||||||||||  ||||||||||||||||| |||||    
T  45122779 gaccttccacatcgaggcttgaacaaccacacaagcaagagagacgccacactcataccc 45122720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 16524500 - 16524463
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttac 297  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  16524500 gagcaaccacacaagtaagagagacaccacactcttac 16524463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 20870551 - 20870632
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactctta 296  Q
    ||||||||||||||||||||  |  |||| |||| |||||||   || ||||||||||||  |||||||| |||||||||||    
T  20870551 gttgggtcatgaggggagccaggaggaccgtccatatcaaggttagaacaaccacacaagcaagagagacaccacactctta 20870632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 41129161 - 41129084
Alignment:
Q  222 catgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||||||  |  |||| |||||||| |||  ||| ||||||||||||| |||||||| |||||||| |||||    
T  41129161 catgaggggagcctgggggaccgtccacatcgaggtttgaacaaccacacaagtaagagagacaccacactcataccc 41129084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 30253787 - 30253671
Alignment:
Q  179 atcgtacccttt-gtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtga 277  Q
    |||||||||||| ||||||| | ||||||||| ||  ||||||||||||||||||||  |  |||  |||||||| |||| ||| |||||||||||||||    
T  30253787 atcgtacccttttgtcgaacggggctctgataccattgttgggtcatgaggggagcctgggggacagtccacatcgaggcttgaacaaccacacaagtga 30253688  T
Q  278 gagagacgccacactct 294  Q
    ||||||| |||||||||    
T  30253687 gagagacaccacactct 30253671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 1085584 - 1085678
Alignment:
Q  205 tgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||| ||| ||||||||||||||||||||  |  |||| |||||||| ||||  || ||||||||||||| |||||||||||||||||||||||    
T  1085584 tgataccactgttgggtcatgaggggagccagggggaccgtccacatcgaggctagaacaaccacacaagtaagagagacgccacactcttaccc 1085678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 30244425 - 30244366
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||    
T  30244425 gaccatccacatcgaggcttgaacaaccacacaagtgagagagacaccacactcttaccc 30244366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 30244569 - 30244453
Alignment:
Q  179 atcgtacccttt-gtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtga 277  Q
    |||||||||||| ||| ||| | ||| ||||| ||  ||||||||||||||||||||     |||| |||||||| |||| ||| |||||||||||||||    
T  30244569 atcgtacccttttgtcaaacggggctttgataccattgttgggtcatgaggggagcctgagggaccgtccacatcgaggcttgaacaaccacacaagtga 30244470  T
Q  278 gagagacgccacactct 294  Q
    ||||||| |||||||||    
T  30244469 gagagacaccacactct 30244453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 30245372 - 30245256
Alignment:
Q  179 atcgtacccttt-gtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtga 277  Q
    |||||||||||| ||||| | | ||||||||| ||| |||||||||| ||||||||   |  |||| |||||||  |||| ||| |||||||||||||||    
T  30245372 atcgtacccttttgtcgagcggggctctgataccactgttgggtcataaggggagcatgggggaccgtccacattgaggcttgaacaaccacacaagtga 30245273  T
Q  278 gagagacgccacactct 294  Q
    ||||||| |||||||||    
T  30245272 gagagacaccacactct 30245256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 37533310 - 37533426
Alignment:
Q  184 accctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagag 282  Q
    |||||| ||||||||| | |||||||| ||| ||||||||| ||||||||| | |  |||| |||||||| ||||  || ||||| ||||||  | ||||    
T  37533310 acccttcgtcgaaccggggctctgataccactgttgggtcacgaggggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagag 37533409  T
Q  283 acgccacactcttaccc 299  Q
    || ||||||||||||||    
T  37533410 acaccacactcttaccc 37533426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 7517751 - 7517676
Alignment:
Q  224 tgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||||  |  ||||| ||||||| ||||  || ||||||||||||||||| |||| ||||||||||||||    
T  7517751 tgaggggagccaaggggaccacccacatcgaggctagaacaaccacacaagtgagacagacaccacactcttaccc 7517676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 30245253 - 30245173
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||| ||||||||| | |  ||||||||||||| |||| ||| ||||||||||    |||||||| ||||||||||||||    
T  30245253 gttgggtcacgaggggagctcgggggaccatccacatcgaggcttgaacaaccacaca----agagagacaccacactcttaccc 30245173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 34218037 - 34218096
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||| |||||||| |||| ||| |||||| ||||| ||||||||| ||||||||||||||    
T  34218037 gaccgtccacatcgaggcttgaacaaccatacaagcgagagagacaccacactcttaccc 34218096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 22567042 - 22567100
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttacc 298  Q
    ||||||||||||| ||||| || ||||| ||||||  |||||||| |||||||||||||    
T  22567042 gaccatccacatcgaggcccgaacaaccccacaagcaagagagacaccacactcttacc 22567100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 30253667 - 30253588
Alignment:
Q  216 ttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| ||||||||| | |  ||||||||||||| |||| ||| ||||||||||    |||||||| ||||||||||||||    
T  30253667 ttgggtcacgaggggagctcgggggaccatccacatcgaggcttgaacaaccacaca----agagagacaccacactcttaccc 30253588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 45434470 - 45434426
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcat 224  Q
    |||||||||||||||||||| |||| |||| ||| ||||||||||    
T  45434470 tcgtaccctttgtcgaaccgggctccgataccactgttgggtcat 45434426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 47129548 - 47129465
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||||||||| | |  |||| |||||||| ||||  || ||||| ||||||  |||||||| ||||||||||||||    
T  47129548 gttgggtcatgaggggagctcggg-gaccgtccacatcgaggctagatcaaccgcacaagcaagagagacaccacactcttaccc 47129465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 10351361 - 10351290
Alignment:
Q  91 atccccctcaaggggaagctcctttcatccatgag-attttgcttgtatcgtcgctcctattttctttgcaa 161  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||| | | |||||||||||||||    
T  10351361 atccccctcaaggggaagatcctttcatccatgagtattttgcttgtatcgttgttgctattttctttgcaa 10351290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 37850544 - 37850659
Alignment:
Q  181 cgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgaga 279  Q
    ||||||||||||||||||| | |||||||| ||  ||||| |||||||||||||   |  |||| |||||||| ||||  |||||||| |||||||||||    
T  37850544 cgtaccctttgtcgaaccggggctctgataccagagttggatcatgaggggagctaggg-gaccgtccacatcgaggctagagcaaccgcacaagtgaga 37850642  T
Q  280 gagacgccacactctta 296  Q
    ||||| |||||||||||    
T  37850643 gagacaccacactctta 37850659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 66414 - 66534
Alignment:
Q  180 tcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| ||||||||| | |||||||||||| |||||||||||||||||||   |   ||| |||||||  ||||  || ||||| |||||| |||    
T  66414 tcgtacccttcgtcgaaccgggactctgatatcactgttgggtcatgaggggagcttggataaccgtccacattgaggctagaacaaccgcacaagcgag 66513  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||||| | ||||||||||    
T  66514 agagacgctatactcttaccc 66534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 19283434 - 19283514
Alignment:
Q  216 ttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactctta 296  Q
    ||||||||||||||||| |  |  ||||  ||||||| ||||  |||||||| ||||||||||||||||||||||||||||    
T  19283434 ttgggtcatgaggggagtcaaggggacctcccacatccaggctagagcaaccgcacaagtgagagagacgccacactctta 19283514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 22077437 - 22077557
Alignment:
Q  180 tcgtaccctttgtcgaacc-gagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| |||||||| | ||||||||  ||| |||||||||  |||||||||  |  |||| |||| ||| | || ||| ||||| || |||||||    
T  22077437 tcgtacccttcgtcgaacctgggctctgatgccactgttgggtcacaaggggagcctgggggaccgtccatatcgatgcttgaacaaccgcataagtgag 22077536  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||||||||||||||||||    
T  22077537 agagacgccacactcttaccc 22077557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 26661840 - 26661960
Alignment:
Q  180 tcgtaccctttgtcgaaccgagct-ctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| |||||| |||| | || ||| |||  |||||||| |||||||||   | ||||||||| ||||||||  ||| ||||||||||||  ||    
T  26661840 tcgtacccttcgtcgaatcgaggttctaataccacttttgggtcacgaggggagctagggagaccatccgcatcaaggattgaacaaccacacaagcaag 26661939  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||| ||||||||||||||    
T  26661940 agagacaccacactcttaccc 26661960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 31767104 - 31767223
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgaga 279  Q
    |||||||||| ||||||| | ||||||||| ||| ||||||||||||||| |||   |  |||| |||||||| || |  || ||||||||||||  |||    
T  31767104 tcgtacccttcgtcgaacggggctctgataccactgttgggtcatgagggaagcttgggggaccgtccacatcgagtctagaacaaccacacaagcaaga 31767203  T
Q  280 gagacgccacactcttaccc 299  Q
     ||||| |||||||||||||    
T  31767204 tagacgtcacactcttaccc 31767223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 47380170 - 47380229
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||| ||||||| |||| |||||||||| |||||||||||||| | |||||||||||||    
T  47380170 gaccacccacatctaggcttgagcaaccagacaagtgagagagatgtcacactcttaccc 47380229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 1188569 - 1188650
Alignment:
Q  219 ggtcatgaggggagccct-gtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||||||||||| |  ||||   |||||| ||| | ||||||||||| ||||||||||||||||||||| ||||||    
T  1188569 ggtcatgaggggagcccttggggaccgcacacatctaggtcagagcaaccacataagtgagagagacgccacacttttaccc 1188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 22077774 - 22077891
Alignment:
Q  183 taccctttgtcgaacc-gagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagaga 281  Q
    ||||||| |||||||| | ||||||||  ||| |||||||||  |||||||||  |  |||| |||||||| | || ||| ||||| || |||||| |||    
T  22077774 tacccttcgtcgaacctgggctctgatgccactgttgggtcacaaggggagcctggaggaccgtccacatcgatgcttgaacaaccgcataagtgaaaga 22077873  T
Q  282 gacgccacactcttaccc 299  Q
    ||||||||||||||||||    
T  22077874 gacgccacactcttaccc 22077891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 34364723 - 34364603
Alignment:
Q  180 tcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| ||||||||| | |||||||| ||| |||||||||   ||||||| | |   |||||||||||| ||||  |||||||| || ||| |||    
T  34364723 tcgtacccttcgtcgaaccggggctctgataccactgttgggtcactgggggagctcagggaaccatccacatcgaggctagagcaaccgcataagcgag 34364624  T
Q  279 agagacgccacactcttaccc 299  Q
    ||||||  |||||||||||||    
T  34364623 agagacatcacactcttaccc 34364603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 3875313 - 3875392
Alignment:
Q  219 ggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttacc 298  Q
    ||||||||||||||| | |  |||| |||||||| ||||  || ||||||||| |||||||||||| ||||| |||||||    
T  3875313 ggtcatgaggggagctcggaggaccgtccacatcgaggctagaacaaccacactagtgagagagactccacattcttacc 3875392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 26661525 - 26661584
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||| |||| ||| |||| ||| |||||||||||| ||||||||| ||||||||||||||    
T  26661525 gaccgtccatatcgaggcttgaacaaccacacaagcgagagagacaccacactcttaccc 26661584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 10351285 - 10351256
Alignment:
Q  270 acaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||||||||||||||||||||    
T  10351285 acaagtgagagagacgccacactcttaccc 10351256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 30697397 - 30697313
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaa-gtgagagagacgccacactcttaccc 299  Q
    ||||||||| |||||||||| ||  ||||  ||||||| |||||  ||||||||| ||| ||||||||||| ||||||||||||||    
T  30697397 gttgggtcacgaggggagcc-tggggaccgcccacatctaggccatagcaaccacgcaaagtgagagagacaccacactcttaccc 30697313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 37555878 - 37555825
Alignment:
Q  246 ccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||| |||| ||| ||||||||||||  |||||||| ||||||||||||||    
T  37555878 ccacatcgaggcttgaacaaccacacaagcaagagagacaccacactcttaccc 37555825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 37556260 - 37556207
Alignment:
Q  246 ccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||| |||| ||| ||||||||||||  |||||||| ||||||||||||||    
T  37556260 ccacatcgaggcttgaacaaccacacaagcaagagagacaccacactcttaccc 37556207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 47379800 - 47379837
Alignment:
Q  259 tgagcaaccacacaagtgagagagacgccacactctta 296  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  47379800 tgagcaatcacataagtgagagagacgccacactctta 47379837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 34649654 - 34649534
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagc-cctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    ||||||||||  |||||| | ||||||||| ||| |||||||||  |||| ||| || |  |||| |||||||| ||||  || ||||||||| ||  ||    
T  34649654 tcgtacccttcatcgaacggggctctgataccactgttgggtcactagggaagctccgggggaccgtccacatcgaggctagaacaaccacactagcaag 34649555  T
Q  279 agagacgccacactcttaccc 299  Q
    ||||||||| |||||||||||    
T  34649554 agagacgcctcactcttaccc 34649534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 43174296 - 43174237
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  43174296 gaccgtccacatcaaggcttgaacaaccacacaagtgagagagacaccacactcttaccc 43174237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 11783496 - 11783613
Alignment:
Q  182 gtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagaga 281  Q
    |||||||| || |||||||||| ||||| ||| |||||||||||||||| |||  |  ||||| ||||||| ||||  ||||||| | ||||| ||||||    
T  11783496 gtacccttcgtggaaccgagctttgataccactgttgggtcatgaggggtgccagggggaccacccacatctaggctagagcaactatacaagcgagaga 11783595  T
Q  282 gacgccacactcttaccc 299  Q
     ||| |||||||||||||    
T  11783596 aacgacacactcttaccc 11783613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 28034384 - 28034326
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttacc 298  Q
    ||||||||||||| || || |||||||| || |||||||||||||||||||||||||||    
T  28034384 gaccatccacatccagaccagagcaaccgcataagtgagagagacgccacactcttacc 28034326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 299
Target Start/End: Complemental strand, 25483541 - 25483432
Alignment:
Q  190 tgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccac 289  Q
    |||||||| | ||| ||||| ||| |||||||||   ||||||||  | ||||| |||||||| ||||  || ||||||||||||  |||||||| ||||    
T  25483541 tgtcgaacggggctatgataccactgttgggtcactgggggagccagggagaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccac 25483442  T
Q  290 actcttaccc 299  Q
    ||||||||||    
T  25483441 actcttaccc 25483432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 36608637 - 36608721
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||| |||||||||   |  |||| |||||||| ||||  || ||||||||| |||||||||||| ||||||||||||||    
T  36608637 gttgggtcacgaggggagcttgggggaccgtccacatcgaggctagaacaaccacactagtgagagagacaccacactcttaccc 36608721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 39792836 - 39792920
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||| |||||||||||||| | |  |||| |||||||| ||||  || ||||||||||||  |||||||| ||||||||||||||    
T  39792836 gttgagtcatgaggggagctcagaggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttaccc 39792920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 4955338 - 4955377
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  4955338 gagcaaccgcacaagtaagagagacgccacactcttaccc 4955377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 15841389 - 15841428
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  15841389 gagcaaccacacaagtgagagagacatcacactcttaccc 15841428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 39404173 - 39404114
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||| |||||||| ||||  || ||||||||||||  |||||||||||||||||||||||    
T  39404173 gaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactcttaccc 39404114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 49076775 - 49076822
Alignment:
Q  182 gtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggg 229  Q
    |||||||||||||||| | ||||||||| ||| |||||||||||||||    
T  49076775 gtaccctttgtcgaacggggctctgataccactgttgggtcatgaggg 49076822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 34004561 - 34004642
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactctta 296  Q
    ||||||||||||| ||||| | | ||||| | |||||| ||||  || ||||| |||||| |||||||||| ||||||||||    
T  34004561 gttgggtcatgagaggagctcgggagaccgttcacatcgaggctagaacaaccgcacaagggagagagacggcacactctta 34004642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 297
Target Start/End: Complemental strand, 2740826 - 2740798
Alignment:
Q  269 cacaagtgagagagacgccacactcttac 297  Q
    |||||||||||||||||||||||||||||    
T  2740826 cacaagtgagagagacgccacactcttac 2740798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 299
Target Start/End: Complemental strand, 3341023 - 3340903
Alignment:
Q  180 tcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    ||||||| || ||||||||| | |||||||| ||| |||||||||   ||||||| | | ||||| |||||||| ||||  || ||||| ||||||  ||    
T  3341023 tcgtaccgttcgtcgaaccggggctctgataccactgttgggtcactgggggagctcaggagaccgtccacatcgaggctagaacaaccccacaagcaag 3340924  T
Q  279 agagacgccacactcttaccc 299  Q
    | |||| ||||||||||||||    
T  3340923 aaagacaccacactcttaccc 3340903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 22183265 - 22183321
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactctta 296  Q
    |||| |||||||| ||||  || |||||  |||||||||||||||||||||||||||    
T  22183265 gaccgtccacatcgaggctagaacaaccgtacaagtgagagagacgccacactctta 22183321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 23556887 - 23556923
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactctta 296  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  23556887 gagcaaccacacaagtaagagagacgtcacactctta 23556923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 12071656 - 12071753
Alignment:
Q  202 ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| ||| ||| |||||||||||||||   |  |||| | |||||| ||||  || |||||||||||||||||||||||||||||||||||||    
T  12071656 ctctgataccactgttaggtcatgaggggagcttaggggaccgttcacatcgaggctagaacaaccacacaagtgagagagacgccacactcttaccc 12071753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 296
Target Start/End: Complemental strand, 16454791 - 16454674
Alignment:
Q  180 tcgtaccctttgtcgaacc-gagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| |||||||| | ||||||||| ||| ||||||||| ||||||||| | |  |||| |||||||| ||||  || ||||| ||||||  ||    
T  16454791 tcgtacccttcgtcgaacctgggctctgataccactgttgggtcacgaggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaag 16454692  T
Q  279 agagacgccacactctta 296  Q
    ||||||||||||||||||    
T  16454691 agagacgccacactctta 16454674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 12085014 - 12085096
Alignment:
Q  217 tgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||||||||||   | ||||| | | |||| ||||  || |||||||||||||||||||||||||||||||||||||    
T  12085014 tgggtcatgaggggagcttaggagaccgttcgcatcgaggctagaacaaccacacaagtgagagagacgccacactcttaccc 12085096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 2579052 - 2579168
Alignment:
Q  180 tcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| ||||||||| | |||||||||||| ||||||||||||||||||| | |  |||| | |||||| ||||  || ||||||||| ||  ||    
T  2579052 tcgtacccttcgtcgaaccgggactctgatatcactgttgggtcatgaggggagctc-ggggaccgtgcacatcgaggctagaacaaccacacgagcaag 2579150  T
Q  279 agagacgccacactctta 296  Q
    |||||| |||||||||||    
T  2579151 agagacaccacactctta 2579168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 2578777 - 2578897
Alignment:
Q  180 tcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| ||||||||| | |||||||| ||| ||||  ||||||||||||||  |  |||| |||||||| ||| | || ||||||||||||  |     
T  2578777 tcgtacccttcgtcgaaccggggctctgataccactgttgattcatgaggggagcctgggggaccgtccacatcgaggtcagaacaaccacacaagcaaa 2578876  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||| ||||||||||||||    
T  2578877 agagacaccacactcttaccc 2578897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 12092485 - 12092542
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttac 297  Q
    ||||| ||||||| ||||| |||||||| |||||||||||||||| ||||| ||||||    
T  12092485 gaccacccacatccaggccagagcaacctcacaagtgagagagacaccacagtcttac 12092542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 10074341 - 10074425
Alignment:
Q  215 gttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||  |||||||||  |  ||| ||||||||| ||||  || ||||||||| |||||||||||| ||||||||||||||    
T  10074341 gttgggtcacaaggggagcctgggggactatccacatcgaggctagaacaaccacactagtgagagagacaccacactcttaccc 10074425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 29518715 - 29518599
Alignment:
Q  184 accctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagag 282  Q
    |||||| ||||||||| | |||||||| ||| ||||||| ||||| ||||| | |  |||| |||||||| ||||  || ||||| ||||||  ||||||    
T  29518715 acccttcgtcgaaccggggctctgataccactgttgggttatgagaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagag 29518616  T
Q  283 acgccacactcttaccc 299  Q
    || ||||||||||||||    
T  29518615 acaccacactcttaccc 29518599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 1127495 - 1127456
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  1127495 gagcaaccacataagtaagagagacgccacactcttaccc 1127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 5832007 - 5832089
Alignment:
Q  216 ttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||||||||| ||  |||| || ||||| ||||  || ||||||||||||| |||||||| ||||||| ||||||    
T  5832007 ttgggtcatgaggggagcc-tggggaccgtctacatcgaggctagaacaaccacacaagtaagagagacaccacacttttaccc 5832089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 10902437 - 10902492
Alignment:
Q  244 atccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||| ||| | || |||||| ||||||||||||||| ||||||||||||||    
T  10902437 atccacatctaggtcagaacaaccatacaagtgagagagacaccacactcttaccc 10902492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 10073594 - 10073678
Alignment:
Q  215 gttgggtcatgaggggagccctgtag-accatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||| |||||||||| || || ||| |||||||| | ||  || ||||||||| |||||||||||| ||||||||||||||    
T  10073594 gttgggtcacgaggggagcc-tgaaggaccgtccacatcgatgctagaacaaccacactagtgagagagacaccacactcttaccc 10073678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 2579815 - 2579934
Alignment:
Q  180 tcgtaccctttgtcgaaccgag-ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgag 278  Q
    |||||||||| || |||||| | |||||||| ||| ||||||| |||||||||| | ||  |||| |||||||| ||||  || ||||| ||||||  ||    
T  2579815 tcgtacccttcgtggaaccggggctctgataccactgttgggtaatgaggggag-cttggggaccttccacatcgaggctagaacaaccgcacaagcaag 2579913  T
Q  279 agagacgccacactcttaccc 299  Q
    |||||| ||||| ||||||||    
T  2579914 agagacaccacattcttaccc 2579934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 6071267 - 6071231
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactctta 296  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  6071267 gagcaaccatacaagcgagagagacgccacactctta 6071231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 16455079 - 16455003
Alignment:
Q  223 atgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||| | |  |||| |||||||| ||||  || ||||| ||||||  |||||||||||||||||||||||    
T  16455079 atgaggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttaccc 16455003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 47964541 - 47964580
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47964541 gagcaaccacacaagtgagagagacgccacactcttaccc 47964580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 37990903 - 37991039
Alignment:
Q  164 gaaccggctgtatcaatcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtag-accatccacatcaaggcctgag 262  Q
    ||||||||||  || ||||||||||||||||||  | || |||||| ||| ||||||||||||||||   ||||  | ||| |||||||| ||||  ||     
T  37990903 gaaccggctgcctcgatcgtaccctttgtcgaatggggccctgataccactgttgggtcatgagggggagcctgagggaccgtccacatcgaggctagaa 37991002  T
Q  263 caaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| |||  |||||||| ||||||||||||||    
T  37991003 caaccacataagcaagagagacaccacactcttaccc 37991039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 45395655 - 45395715
Alignment:
Q  239 agaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||| |||||||| ||||  |||||||| |||||||||||||||| ||||||||||||||    
T  45395655 agaccctccacatcgaggctagagcaaccccacaagtgagagagacaccacactcttaccc 45395715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 3135045 - 3135099
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagcc 234  Q
    |||||||||||||||||| | ||||||||| |||  |||||||||||||||||||    
T  3135045 tcgtaccctttgtcgaacggtgctctgataccactattgggtcatgaggggagcc 3135099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 3135397 - 3135513
Alignment:
Q  180 tcgtaccctttgtcgaaccgagctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgaga 279  Q
    |||||||||||||||||  | ||||||||| ||| |||||||||||||| ||| |  |  |||| |||||||| ||||  || ||||| ||||||  | |    
T  3135397 tcgtaccctttgtcgaatggggctctgataccacagttgggtcatgaggagagtcagggggaccgtccacatcgaggctagaacaaccgcacaagcaaaa 3135496  T
Q  280 gagacgccacactctta 296  Q
    ||||| |||||||||||    
T  3135497 gagacaccacactctta 3135513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 33803255 - 33803314
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||| |||||||| ||||  || |||||||||||| ||| ||||||||||||||||||||    
T  33803255 gaccgtccacatcgaggctagaacaaccacacaagagagggagacgccacactcttaccc 33803314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 25755572 - 25755490
Alignment:
Q  217 tgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||||||  | |  ||||||||||||| ||||  || ||||| ||||||  |||||||||||||||| ||||||    
T  25755572 tgggtcatgaggggagttcgggggaccatccacatcgaggctagaacaaccgcacaagcaagagagacgccacacttttaccc 25755490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 47964923 - 47964977
Alignment:
Q  245 tccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| ||||| || ||| || | ||||||||||||||||||||||||||||    
T  47964923 tccacatctaggccagaacaatcatataagtgagagagacgccacactcttaccc 47964977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 41359774 - 41359827
Alignment:
Q  246 ccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||| ||||  || |||||||||||| ||||||||||||||| ||||||||    
T  41359774 ccacatcgaggctagaacaaccacacaagcgagagagacgccacattcttaccc 41359827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 54017842 - 54017878
Alignment:
Q  263 caaccacacaagtgagagagacgccacactcttaccc 299  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  54017842 caaccacacaagtaagagagacaccacactcttaccc 54017878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 3622855 - 3622950
Alignment:
Q  202 ctctgatatcaccgttgggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttacc 298  Q
    |||||||| ||  ||||||||||||||| |||||||  ||||| ||||||| ||||  | |||||||||| ||||| ||||||| ||||||||||||    
T  3622855 ctctgataccattgttgggtcatgagggaagccctggggaccacccacatccaggcagg-gcaaccacactagtgacagagacgtcacactcttacc 3622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 1028520 - 1028578
Alignment:
Q  240 gaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttacc 298  Q
    |||| |||||||| ||||  || ||||| ||||||||||||||||||||||||||||||    
T  1028520 gaccgtccacatcgaggctagaacaaccgcacaagtgagagagacgccacactcttacc 1028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 26590914 - 26590970
Alignment:
Q  241 accatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttac 297  Q
    |||||||||||| |||   || ||||||||| |||||||||||||||||||||||||    
T  26590914 accatccacatcgaggttagaacaaccacactagtgagagagacgccacactcttac 26590970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 26074169 - 26074208
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  26074169 gagcaaccacactagtgagagagacaccacactcttaccc 26074208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 26074747 - 26074708
Alignment:
Q  260 gagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  26074747 gagcaaccacactagtgagagagacaccacactcttaccc 26074708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 624346 - 624292
Alignment:
Q  245 tccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttaccc 299  Q
    |||||||| ||||  || ||||| |||||||||||||||| ||||||||||||||    
T  624346 tccacatcgaggctagaacaaccccacaagtgagagagacaccacactcttaccc 624292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 38427723 - 38427645
Alignment:
Q  219 ggtcatgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagagagacgccacactcttac 297  Q
    ||||| ||||||||| | | ||| |||||||||| |||   || ||||| ||||||||||||||||| |||||||||||    
T  38427723 ggtcacgaggggagctcggaagatcatccacatcgaggttagaacaaccgcacaagtgagagagacgtcacactcttac 38427645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 6500663 - 6500546
Alignment:
Q  184 accctttgtcgaaccg-agctctgatatcaccgttgggtca-tgaggggagccctgtagaccatccacatcaaggcctgagcaaccacacaagtgagaga 281  Q
    |||||| ||||||||| | |||||||| ||| ||||||| | |||||||||||  |  |||| |||||||| ||||  || ||||| ||||||  |||||    
T  6500663 acccttcgtcgaaccggaactctgataccactgttgggtaagtgaggggagcctgggggaccgtccacatcgaggctagaacaaccgcacaagcaagaga 6500564  T
Q  282 gacgccacactcttaccc 299  Q
    ||| ||||||||||||||    
T  6500563 gacaccacactcttaccc 6500546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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