View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_27 (Length: 289)
Name: NF16976_low_27
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 33250544 - 33250286
Alignment:
| Q |
11 |
caaaggatgaagttgtaggaggttgtttcttttgtggtgnnnnnnngttgtgacattgaatccatgaaagttggcttcctgtgtctaaaaccatttgttg |
110 |
Q |
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|||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250544 |
caaacgatgaagtagtaggaggttgtttcttttgtggtgtttttttgttgtgacattgaatccatgaaagttggcttcctgtgtctaaaaccatttgttg |
33250445 |
T |
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| Q |
111 |
aagctgtggtggtgtgccaatgggaagagtcacaacaagagccatagaatatttgaaagatgatttaacatttatggaagaagaagatgaagatgaaagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250444 |
aagctgtggtggtgtgccaatgggaagagtcacaacaagagccatagaatatttgaaagatgatttaacatttatggaagaagaagatgaagatgaaagt |
33250345 |
T |
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| Q |
211 |
gttgtgaattgttggttggtttttgttttggagtttgtggagatttgaagagatgttag |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250344 |
gttgtgaattgttggttggtttttgttttggagtttgtggagatttgaagagatgttag |
33250286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 33264636 - 33264482
Alignment:
| Q |
11 |
caaaggatgaagttgtaggaggttgtttcttttgtggtgnnnnnnngttgtgacattgaatccatgaaagttggcttcctgtgtctaaaaccatttgttg |
110 |
Q |
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|||| |||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||| || |||||||||||||| |
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| T |
33264636 |
caaacgatgaagtcgtaggaggttgtttcttttgtggtccttttttgttgtcacagtgaatccatgaaacttggcttcctgtatccaaaaccatttgttg |
33264537 |
T |
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| Q |
111 |
aagctgtggtggtgtgccaatgggaagagtcacaacaagagccatagaatatttg |
165 |
Q |
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| T |
33264536 |
aagctgtggtggtgttccaatgggaagagtcacaacaagggccatagaatatttg |
33264482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 50237036 - 50236782
Alignment:
| Q |
16 |
gatgaagttgtaggaggttgtttcttttgtggtgnnnnnnngttgtgacattgaatccatgaaagttggcttcctgtgtctaaaacc-atttgttgaagc |
114 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||| || || ||| ||||||||||| |
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| T |
50237036 |
gatgaagttgtaggaggttgtttcttttgcggtgcttttttgttgtgacactgaatccatgaaatttggcttcctgtatccaatacccatttgttgaagt |
50236937 |
T |
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| Q |
115 |
tgtggtggtgtgccaatgggaagagtcacaacaagagccatagaatatttgaaagatgatttaacatttatggaagaagaagatgaagatgaaagtgttg |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50236936 |
tgtggtggtgtgccaatgggaagagtcagaacaagagccatagaatatttgaaagatgatttaacatttatggaagaagaagatgaagatgaaagtgttg |
50236837 |
T |
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| Q |
215 |
tgaattgttggttggtttttgttttggagtttgtggagatttgaagagatgttag |
269 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |
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| T |
50236836 |
tgaattgttggttggtttttggtttggagtttatggagatttgaagagaggttag |
50236782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 29395242 - 29395166
Alignment:
| Q |
58 |
ttgtgacattgaatccatgaaagttggcttcctgtgtctaaaaccatttgttgaagctgtggtggtgtgccaatggg |
134 |
Q |
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|||||||| |||||||||||||||||||| || ||||| || |||||| ||||| || |||||||| |||||||| |
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| T |
29395242 |
ttgtgacactgaatccatgaaagttggctaccagtgtccaacaccattggttgagtttgaggtggtgttccaatggg |
29395166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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