View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_29 (Length: 278)
Name: NF16976_low_29
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 45103234 - 45103497
Alignment:
| Q |
1 |
tctcatctcaatcggacctcaagtcacctgacccacattgtatacgggccacatattgggccgacctaatgtttggcaatacggtccacaattacaataa |
100 |
Q |
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| T |
45103234 |
tctcatctcaatcggacctcaagtcacctgacccacattgtatacgggccacatattggggcgacctaatgtttggcaatacggtccacaattacaataa |
45103333 |
T |
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| Q |
101 |
ttgnnnnnnnnnnnnnn-gttgacaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagttga |
199 |
Q |
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| T |
45103334 |
ttgtttttttttttttttgttgacaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagtcga |
45103433 |
T |
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| Q |
200 |
aagtaattaatattggatcgtatttcacgattctttgtctgttctttcttctcccttatccccc |
263 |
Q |
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| T |
45103434 |
aagtaattaatattggatcgtatttcacgattctttgtctgttctttcttctcccttatccccc |
45103497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 45130034 - 45130132
Alignment:
| Q |
122 |
acaaattattacaataattgttgtaaaattaaataaaaatgtccattatagtacattgcatttatatatatcagttgaaagtaattaatattggatcgt |
220 |
Q |
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| T |
45130034 |
acaagttatcacaataattgttgtaaaataaaataaaaatgtccattatgatacattgcatttatatatagcagtcgaaagtaattaatgttcgatcgt |
45130132 |
T |
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