View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16976_low_30 (Length: 275)
Name: NF16976_low_30
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_30 |
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| [»] scaffold0210 (2 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: scaffold0210 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 11321 - 11570
Alignment:
| Q |
10 |
gcacagacttcatcatatctttggttgtagatgatttttctcgtttcagcaatccgtatgtttgaaaactcagatctaacatttcgggaaacaatttcgc |
109 |
Q |
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| T |
11321 |
gcacagacttcatcatatctttggttgtagatgatatttctcgttccagcaatccatatgtttgaaaactcagatgtaacatttcgggaaacaatttcac |
11420 |
T |
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| Q |
110 |
tatatatgacattgacggtacctccacacggagctggaaatcaaccaaatagcttgtctccaatttaactatgtaggagatttcattccagcatataact |
209 |
Q |
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| T |
11421 |
tatatatgacattgacagtacctccacacgaagctggaaatcaaccaaatagtttgtctccaatttaactatgtaggagatttcattccagcatatagct |
11520 |
T |
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| Q |
210 |
atattgttagcaccgtagctatgagttgaattgctcatttatatcattag |
259 |
Q |
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| T |
11521 |
atattgttagcaccgtagctatgagttgaattgctcatttatatcattag |
11570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 3329 - 3373
Alignment:
| Q |
10 |
gcacagacttcatcatatctttggttgtagatgatttttctcgtt |
54 |
Q |
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| T |
3329 |
gcacagacttcatcatatcaatggttgcagatgattcttctcgtt |
3373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 12713483 - 12713345
Alignment:
| Q |
121 |
ttgacggtacctccacacggagctggaaatcaaccaaatagcttgtctccaatttaactatgtaggagatttcattccagcatataactatattgttagc |
220 |
Q |
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| T |
12713483 |
ttgacagtaccaccacacggagctggaaatcaaccaaatagcttgtctccaatttaactatgtaggagttttcattccagcatataactatattgttagc |
12713384 |
T |
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| Q |
221 |
accgtagctatgagttgaattgctcatttatatcattag |
259 |
Q |
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| T |
12713383 |
accgtagctatgagttgaattgctcatttatatcattag |
12713345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 12713544 - 12713480
Alignment:
| Q |
10 |
gcacagacttcatcatatctttggttgtagatgatttttctcgtttcagcaatccgtatgtttga |
74 |
Q |
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| T |
12713544 |
gcacagacttcatcatatctttggttgtagatgatttttctcgttccagcaatctgtatgtttga |
12713480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 12721339 - 12721295
Alignment:
| Q |
10 |
gcacagacttcatcatatctttggttgtagatgatttttctcgtt |
54 |
Q |
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| T |
12721339 |
gcacagacttcatcatatcaatggttgcagatgattcttctcgtt |
12721295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 7878793 - 7878721
Alignment:
| Q |
10 |
gcacagacttcatcatatctttggttgtagatgatttttctcgtttcagcaatccgtatgtttgaaaactcag |
82 |
Q |
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| T |
7878793 |
gcactgacttcatcatatctttggttgctgatgatttttctcgttccagcaatgcgtatgttggaaaactcag |
7878721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 12758 - 12802
Alignment:
| Q |
10 |
gcacagacttcatcatatctttggttgtagatgatttttctcgtt |
54 |
Q |
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| T |
12758 |
gcacagacttcatcatatctttggttgcagatgattcttctcgtt |
12802 |
T |
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