View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16976_low_31 (Length: 273)
Name: NF16976_low_31
Description: NF16976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16976_low_31 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 33153846 - 33153593
Alignment:
| Q |
19 |
aaattgcagccaaaataaataaaagattgcagagacatttttatcattctaattttacatgtttttgnnnnnnnnttgacannnnnnnnnnatttgaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
33153846 |
aaattgcagccaaaataaataaaagattgcagagacatttttatcattctaattttacatgtttttgaaaaaaaattga-attttttttttatttgaatg |
33153748 |
T |
|
| Q |
119 |
attcacggattgttaggtcatgaggggagtttgggagattattcacattaggtcaaaagcaaacacacaagtgagttggatatcatattttaattcaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
33153747 |
attcacggattgttaggtcatgagaggagtttgggagattattcacattaggtcaaaagcaaacacacaagtgagttggataccatattttaatttaaaa |
33153648 |
T |
|
| Q |
219 |
tcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacctccact |
273 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33153647 |
ttttaagacaatgagtttttgaattatcttgcttataaagtgttcaacctccact |
33153593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 46546387 - 46546445
Alignment:
| Q |
214 |
caaaatcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacctccac |
272 |
Q |
| |
|
||||| |||||| ||||| |||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
46546387 |
caaaaccttaaggcaatgggtttatggattctctaacttataaagtgttcaacctccac |
46546445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 45121972 - 45122026
Alignment:
| Q |
214 |
caaaatcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacct |
268 |
Q |
| |
|
|||||||||||| |||||||||| ||| | ||||| ||||||||||||||||||| |
|
|
| T |
45121972 |
caaaatcttaaggcaatgagtttatgagtcctcttacttataaagtgttcaacct |
45122026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 2336758 - 2336661
Alignment:
| Q |
176 |
agcaaacacacaagtgagttggatatcatattttaattcaaaatcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacctccact |
273 |
Q |
| |
|
||||| ||||||||||||||||| | || || |||| |||||||||||| || ||| ||| || | |||| |||||||||||||||||||||||| |
|
|
| T |
2336758 |
agcaaccacacaagtgagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccact |
2336661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 6071228 - 6071169
Alignment:
| Q |
214 |
caaaatcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacctccact |
273 |
Q |
| |
|
|||||||||||| |||||||||| || || ||| |||||||||||||||||||||||| |
|
|
| T |
6071228 |
caaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccact |
6071169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 10073678 - 10073732
Alignment:
| Q |
214 |
caaaatcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacct |
268 |
Q |
| |
|
|||||||||||| |||||||||| || || ||||| ||||||| ||||||||||| |
|
|
| T |
10073678 |
caaaatcttaagccaatgagtttatggatcctcttacttataaggtgttcaacct |
10073732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 12092543 - 12092603
Alignment:
| Q |
213 |
tcaaaatcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacctccact |
273 |
Q |
| |
|
|||||| |||||| |||||||||| || || |||| ||||||||||| |||||||||||| |
|
|
| T |
12092543 |
tcaaaaccttaaggcaatgagtttatggatcctctcacttataaagtgctcaacctccact |
12092603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 24600376 - 24600430
Alignment:
| Q |
214 |
caaaatcttaagacaatgagtttttgaattctcttgcttataaagtgttcaacct |
268 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||| ||||||| |||||||||| |
|
|
| T |
24600376 |
caaaaccttaagacaatgagtttatgagttctcttacttataatatgttcaacct |
24600430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University